A user interface for cloud based medical image storage

Python/R scripts for neural/behavioral data analysis from the Photographer Paradigm

BIDS app to view a dataset content and the events file content

MP2RAGE Scripts - T1 map correction & Background noise removal

Rapid and automated conversion of neuroimaging data to BIDS

A repo of current preprocessing methods for the Cogan Lab

Reconstruction of preprocessed q-space images (dMRI)

A Django(backend) & React(frontend) based full-stack real time auction application

This an example app that can serve as a template.

The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.

Preprocessing of arterial spin labeling (ASL) data

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

BIDScoin converts your source-level neuroimaging data to BIDS