Conda recipes for the bioconda channel.

Unix, R and python tools for genomics and data science

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Syntax highlighting for computational biology

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

A simple Snakemake profile for Slurm without --cluster-config

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

Demonstrating best practices for bioinformatics command line tools

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

CUT&RUN and CUT&Tag data processing and analysis

Aim to be the bioinformatics repository with more and newer packages

Analysis pipelines for genomic sequencing data

Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH

Bioinformatics analysis scripts, workflows, general code examples

Useful bioinformatic scripts

Bioinformatics on GCP, AWS or Azure

Collects software dedicated to predicting specific properties of peptides

VAPiD: Viral Annotation and Identification Pipeline

genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.