Search guide-RNA sequences given a genome or gene sequence

CRISPR-Cas9 Excision Therapy Suitability

Research associated to CRISPR-Cas. Completed under Dr. Manuel Lladser at CU boulder

CRISPR sgRNAs guide analysis software

CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.

BWA-based alignment of CRISPR gRNA spacer sequences

Collection of R packages that work in harmony for CRISPR gRNA design

Fork of Azimuth (Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency), updated to work with Python 3.10+

Comprehensive design of CRISPR gRNAs for nucleases and base editors

Useful human and mouse data for the crisprVerse ecosystem

Base functions and classes for CRISPR gRNA design

Tutorials for the crisprVerse

Explore the cancer relevance of your gene list

On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

Bowtie-based alignment of CRISPR gRNA spacer sequences

Pre-trained models for the crisprScore package

🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing