dada2

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LaurenQ2 / Microbiome-Analysis-in-QIIME2

Microbiome analysis pipeline with reference tutorial. This code was written in October 2024 to process rRNA marker gene data (16S and ITS) from rhizosphere soil samples.

unite high-throughput-sequencing 16s soil-sample rrna taxonomy-assignment its microbiome-analysis mafft dada2 marker-gene-analysis greengenes qiime2 microbiome-workflow fasttree microbiome-analysis-pipelines soil-microbiome rhizospheres

Updated Feb 4, 2025
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DavideScarpetta / taxonomic_profiling

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Metabarcoding analysis pipeline, using DADA2 and qiime2

bioinformatics bioinformatics-pipeline metabarcoding dada2 cutadapt qiime2 taxonomic-profiling metabarcoding-data

Updated Jan 9, 2024
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BryanAbuchery / 16S-rRNA-End-to-End-Analysis

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Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.

dada2 fastqc qiime2 rna-analysis mock-analysis

Updated Jan 18, 2021
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