Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
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Updated
Aug 8, 2024 - Python
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
A python framework for data mining microbial natural products by integrating genomics and metabolomics data
Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects
The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.
This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates
A Python toolkit for biomedical data integration
AD & PD cohort variable distributions
Code and sample data for McGregor et al., 2024
Python library for intelligent data stewardship using Large Language Model (LLM) embeddings
Intelligent data steward toolbox using Large Language Model embeddings for automated Data-Harmonization
International Physical Activity Questionnaire (IPAQ) variables
Visualizing demographic evolution using geographically inconsistent census data
This is the source code for the Harmony project REST API
Miscellaneous codes for spatial mapping and raster data manipulation
Proof-of-concept for storing and querying harmonized AMR Genomic Analysis Results in datahike
Miscellaneous codes for harmonizing agricultural output and other agri-related data raster files and shapefiles. Extracts from raster files the grid-cell data by shapefile boundary.
NES
Graphics for the article "Methods used in the development of Common Data Models for health data – a Scoping Review"
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