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embeddings

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This notebook does the analysis of a protein sequence dataset in FASTA format. It addresses challenges in data import, alignment, embedding, and classification using bioinformatics tools and machine learning techniques. The solution provides a systematic approach to extract insights from structured data, crucial for bioinformatics research.

  • Updated Jun 14, 2024
  • Jupyter Notebook

This Network-graph based literature review tool uses the open-source version of Neo4j with Jupyter Notebooks written in Python to import academic literature metadata from a variety of sources including OpenAlex, arXiv, Sematic Scholar and Web of Science. Also incorporated are OpenAI vector embeddings using Neo4j's Vector Search Index capabilities.

  • Updated Oct 30, 2023
  • Jupyter Notebook

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