A program that uses the Synteny Index algorithm to compare between Eukaryotes.
-
Updated
Jan 3, 2023 - Perl
A program that uses the Synteny Index algorithm to compare between Eukaryotes.
NextITS pipeline documentation
Datasets and statistics code used for "Objective 1" for PhD Thesis
Sequence processing and analysis code used to investigate the effects of different DNA extraction methods and PCR variability on multi-taxon DNA meta-barcoding estimates of soil biodiversity.
MegaVir is a bioinformatic pipeline for virome characterization and genome assembly.
V. M. Gumerov, E. P. Andrianova, M. A. Matilla, Karen M. Page, Elizabet Monteagudo-Cascales, A. C. Dolphin, T. Krell, I. B. Zhulin (2022). Amino acid sensor conserved from bacteria to humans.
EuCAP, a Eukaryotic Community Annotation Package (adapted from the implementation developed for the Rice Genome Annotation Project)
The Tree of Sex Ontology (TOSO) covers any trait related to reproduction included in the Tree of Sex database
This is a microbial amplicon sequence (16S and 18S iTag) data and analyses pipeline corresponding to the manuscript, "Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California" for public benefit and usage.
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries
examination of genome size across all kingdoms
Simulation of the motion of the eukariotic cell Chlamydomonas Reinhardtii
Scripts for paper Vaulot et al. 2022
A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio
Pipeline for eukaryotic genome annotation based on external evidences
Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
Add a description, image, and links to the eukaryotes topic page so that developers can more easily learn about it.
To associate your repository with the eukaryotes topic, visit your repo's landing page and select "manage topics."