Functional LD-interval EnrichmEnt Test -- biological interpretation of GWAS signals

Developed by Qiaoshan Lin in Yaowu Yuan Lab

Responsive single-page search app for EMBL's Array Express archive. Written in Backbone + Marionette.

Pipeline to process CRISPRi library sequencing data

SLIDER: Scoring Soriting Screens with Laplace and Differential Rank

R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.

Predicting gene essentiality from transposon insertion sequencing (TnSeq) genomics data with machine learning

An R package to identify plant transcription factors from protein sequence data and classify them in families

Ralstonia eutropha BarSeq analysis

A curated list of regulatory genomics papers and resources.

TnSeq data processing workflow

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

After getting the bed file from the Peak calling, we can annotate and create all downstream analysis of two sets of data

Files used to generate Michelle Franc Ragsac's Ph.D. Dissertation

✂️ Pooled CRISPR screen optimization tool

In-house scripts for data processing and analysis

Examples to get started with IBM Functional Genomics Platform

Ortholog/homolog mapping for Geneweaver

Documentation site for the Geneweaver project.