MDAnalysis is a Python library to analyze molecular dynamics simulations.
Interaction Fingerprints for protein-ligand complexes and more
Fast and accurate aerodynamic modeling using general numerical lifting-line theory.
a python package for the interfacial analysis of molecular simulations
Parallel algorithms for MDAnalysis
a logistics and persistence engine for the analysis of molecular dynamics trajectories
MDAnalysis tool to calculate membrane curvature.
pKa estimates for proteins using an ensemble approach
Command line interface for MDAnalysis
Molecular Dynamics Simulation of Alanine Dipeptide and Dihedral Angle Analysis
Solvent network analysis. Hop is a python package based on MDAnalysis to analyze solvation dynamics.
Access to data for workshops and extended tests of MDAnalysis.
SAPT energy calculator built using MDAnalysis and Psi4
A package for molecular dynamics analysis and parallel tempering in GROMACS
Scripts to prepare and analyze molecular dynamics simulations
Molecular visualization for MDAnalysis with MolecularNodes in Blender
A batteries-included toolkit of analysis modules and helper functions for molecular dynamics (MD) simulations.
Analysis of molecular dynamics trajectories or conformational ensembles in terms of spin-label distances as probed in double electron-electron resonance (DEER) experiments.
Streaming analysis from running MD simulations.
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