HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
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Jul 14, 2020 - Python
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metagenomes
Here are 13 public repositories matching this topic...
This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
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Apr 22, 2021 - Python
Software for prediction of plasmid sequences in metagenomic assemblies
tensorflow
prediction
classification
fasta
plasmid
metagenomes
contigs
metagenome
plasmid-sequences
metagenome-assembly
plasmids
plasflow
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Jun 28, 2021 - Python
An algorithm for recovering haplotypes from metagenomes
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Jun 29, 2021 - Python
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Aug 9, 2022 - Python
This project aims do describe and explore the metagenomes of fern species of the genus Azolla.
bioinformatics
snakemake
conda
metagenomics
bioinformatics-pipeline
plant
bioconda
biological-data-analysis
metagenomes
symbiosis
fair-data
metagenome-assembly
metagenomic-pipeline
symbiont
azolla
endophytes
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Aug 12, 2022 - Python
Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
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Jul 24, 2024 - Python
normalizing metagenomics abundances based on OTU abundances.
bioinformatics
metagenomics
genome-analysis
metagenomes
bacterial
bacterial-genomes
bacterial-genomics
metagenomics-count
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Aug 21, 2024 - Python
bacterial genome deep learning using keras
deep-neural-networks
deep-learning-algorithms
deeplearning
genome-analysis
metagenomes
bacterial-deep
bacterial-metagenomics
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Aug 21, 2024 - Python
application of expression basedneural network to metagenomics
bioinformatics
deep-neural-networks
deep-learning
neural-network
metagenomics
genome-analysis
metagenomes
neural-network-metagenomics
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Aug 22, 2024 - Python
FOCUS: An Agile Profiler for Metagenomic Data
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Sep 15, 2024 - Python
Minimum Information about any (X) Sequence” (MIxS) specification
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Oct 15, 2024 - Python
XGBoost implementation for bacteria family identification
metagenomics
phylogenetics
classification
metagenomes
phylogeny
metagenomic-analysis
metagenomic-classification
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Nov 4, 2024 - Python
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