#
nanopore-analysis-pipeline
Here are
23 public repositories
matching this topic...
HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
Updated
Aug 30, 2024
Python
PuntSeq - Chasing the microbial diversity of Cambridge's freshwater
Updated
Nov 10, 2020
HTML
Species-level Taxonomic Abundance from 16S rRNA Sequencing (STARS)
Updated
Nov 15, 2023
Nextflow
This is just small command line pipeline to simplify going from ONT Unbasecalled data using Guppy to Assembly using Flye, all of the tools are existing tools.
Updated
Nov 14, 2021
Python
snakemake pipeline based on nanopolish
Updated
Feb 6, 2020
Python
A bioinformatic pipeline for aligning amplicon reads to a DNA database based on Nextflow
Updated
Nov 13, 2023
Nextflow
Nanopore sequencing experimental protocols and computational pipelines
Updated
Feb 17, 2023
Shell
Rapid comprehensive adaptive nanopore-sequencing of CNS tumours set-up and analysis pipeline
Updated
May 27, 2022
Shell
Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy
Updated
May 21, 2021
Jupyter Notebook
Dorado-basecalled reads improve old bacterial genome assembly
Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads
Updated
Feb 2, 2024
Python
A generic best practice workflow for processing human Oxford Nanopore Technologies (ONT) sequencing data.
Updated
Mar 6, 2023
Shell
Haplotype aware variant calling from long read sequence
Updated
Jul 31, 2024
Shell
Updated
Oct 17, 2024
Shell
LoRA, A Long Read Assembly pipeline for microbiome data
Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.
Updated
Nov 22, 2022
Nextflow
Updated
Mar 25, 2023
Shell
Analysis of sequencing error profile for long read data.
Updated
Mar 30, 2023
Python
Single cell Nanopore sequencing data for Genotype and Phenotype
Updated
Sep 5, 2024
Python
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