SMIS: Single Molecular Integrative Scaffolding. A pipeline for scaffolding genome assemblies using long reads (PacBio, ONT)
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Updated
Feb 19, 2018 - C
SMIS: Single Molecular Integrative Scaffolding. A pipeline for scaffolding genome assemblies using long reads (PacBio, ONT)
Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies
Build highly accurate transcripts from long-read RNA data
Benchmarking for long-reads assembler
FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.
CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data
The analysis of shotgun metagenomic sequencing data generated from Oxford Nanopore Technology (ONT).
Get L. pneumophila ST from long-read or hybrid assemblies.
Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq
Magnipore: Differential single nucleotide changes of ONT signals
Wrapper to read fast5 and pod5 files.
Wrapper to read fast5, slow5, blow5 and pod5 files.
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