Correction for flow cytometry histograms when part of the population is in noise

An implementation of the depth-resolved phytoplankton primary production model by Westberry et al. 2008.

As part of my PhD I created a 1D biogeochemical configuration based on PISCES model (version 1 - Bopp et al, 2005) The configuration was created to study the impact of environmental changes (mainly Mixed Layer Depth and Light) over Southern Ocean primary production, from the seasonal to decadal scales.

Supplementary files for Ribeiro et al. ISME 2018

Code and data for Randelhoff et al. (2019), "The evolution of light and vertical mixing across a phytoplankton ice-edge bloom"

An online calculator for iron limitation culture experiments

Research Derby project to study the connection between MJO, chlorophyll-a, and SST

Modules for the Lagrangian Plankton Model (LPM) integrated on the PALM LES model in the ocean mixed layer

Calculate various MHWs(Marine Heat Waves) properties from daily SST datas

from first principles to end to end ecosystem models

Functions and a walkthrough to visualize common photosynthesis-irradiance relationships

Function that calculates the maximum phytoplankton growth rate at specified temperature(s) according to the Eppley growth curve

Provides Mathematica code to generate results from "Modeling the Metabolic Evolution of Mixotrophic Phytoplankton in Response to Rising Ocean Surface Temperatures"

Calculating future changes in Arctic phytoplankton using the emergent constraint method

A PyTorch implementation of the Multi-Mode CNN to reconstruct Chlorophyll-a time series in the global ocean from oceanic and atmospheric physical drivers

Scripts, data and outputs to process the data and recreate the figures from Rohwer, Ladwig et al. (2022)

Southern Ocean phytoplakton observations stored in a relational SQL database

This work is part of the PhytoArk project.

This is the base code of the University of Victoria (UVic) Earth System Climate Model version 2.9 with the Model of Ocean Biogeochemistry and Isotopes (MOBI).