Code for the AED2 water quality / ecology library

This is the base code of the University of Victoria (UVic) Earth System Climate Model version 2.9 with the Model of Ocean Biogeochemistry and Isotopes (MOBI).

Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow

A PyTorch implementation of the Multi-Mode CNN to reconstruct Chlorophyll-a time series in the global ocean from oceanic and atmospheric physical drivers

Southern Ocean phytoplakton observations stored in a relational SQL database

An implementation of the depth-resolved phytoplankton primary production model by Westberry et al. 2008.

Calculating future changes in Arctic phytoplankton using the emergent constraint method

Modules for the Lagrangian Plankton Model (LPM) integrated on the PALM LES model in the ocean mixed layer

As part of my PhD I created a 1D biogeochemical configuration based on PISCES model (version 1 - Bopp et al, 2005) The configuration was created to study the impact of environmental changes (mainly Mixed Layer Depth and Light) over Southern Ocean primary production, from the seasonal to decadal scales.

Code and data for Randelhoff et al. (2019), "The evolution of light and vertical mixing across a phytoplankton ice-edge bloom"

Supplementary files for Ribeiro et al. ISME 2018

This work is part of the PhytoArk project.

from first principles to end to end ecosystem models

Scripts, data and outputs to process the data and recreate the figures from Rohwer, Ladwig et al. (2022)

Functions and a walkthrough to visualize common photosynthesis-irradiance relationships

Calculate various MHWs(Marine Heat Waves) properties from daily SST datas

Este es un repositorio para un proyecto enfocado en la clasificación de fitplancton.

Research Derby project to study the connection between MJO, chlorophyll-a, and SST

assess the impact of 2024 Central American fires on surface ocean properties in the Gulf of Mexico