Here are
11 public repositories
matching this topic...
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
Updated
Nov 12, 2024
Cython
Cython bindings and Python interface to HMMER3.
Updated
Nov 5, 2024
Cython
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
Updated
Nov 6, 2024
Cython
Unicode Extended grapheme clusters in nanoseconds
Updated
Oct 28, 2024
Cython
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
Updated
Aug 28, 2024
Cython
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
Updated
Dec 4, 2024
Cython
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
Updated
May 8, 2024
Cython
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
Updated
Nov 4, 2024
Cython
Cython bindings and Python interface to Jess, a 3D template matching software for protein structures.
Updated
Nov 29, 2024
Cython
Sam is a flexible MCMC sampler for Python, designed for astrophysical applications.
Updated
Aug 7, 2024
Cython
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
Updated
Nov 4, 2024
Cython
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