memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
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Updated
Oct 1, 2024 - C++
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
subset and spaced seed design tool
SequenceLab is a benchmark suite for evaluating computational methods for comparing genomic sequences, such as pre-alignment filters and pairwise sequence alignment algorithms. SequenceLab is described by Rumpf et al. at https://arxiv.org/abs/2310.16908
Mapping reads to a corresponding genome using a suffix tree (linear time construction) and Smith-Waterman local alignment algorithm
DNA read mapping (seed-extension-aligner)
The GPU-version and MPI-version of PerM
S3: Sequence Similarity Search (Protein Sequence)
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