A Python package for identification Differential Spatial Expression Pattern (DESP) gene by interpretable deep learning from multi-slice spatial omics data.
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Updated
Aug 8, 2024 - Jupyter Notebook
A Python package for identification Differential Spatial Expression Pattern (DESP) gene by interpretable deep learning from multi-slice spatial omics data.
Interactive visualization of spatial omics data
a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
Interoperability between SpatialData and the Xenium Explorer
BANKSY: spatial clustering
SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
End-to-end analysis of spatial multi-omics data
ClusterMap for multi-scale clustering analysis of spatial gene expression
Dependency-aware deep generative models for multitasking analysis of spatial genomics data
Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis
A Python package for the Scalable and accurate identification condition-relevant niches from spatial -omics data.
Cell-type Relationship Analysis Workflow Done Across Distances
Spatial analysis toolkit for single cell multiplexed tissue data
conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
R package to visualize colocalization for single cell & spatially-resolved genomics data
A Lightweight & Versatile Visualization Tool for Spatial-Omics Data
Multimodal Variational Autoencoder dedicated to omics data integration
Perform RESTORE normalization on multiplexed imaging data.
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