Dynamical analysis of minimnal networks based on approximate majority algorithm (AM)
Code and models for Flux-balance Enzyme Cost Minimization (fECM)
LibSBMLSim: A library for simulating SBML models (Version 2)
An efficient Java™ solver implementation for SBML
Matlab code for resource balance analysis
DMS1401ZB Mathematical Systems Biology
LibSBMLSim: A library for simulating SBML models
An SBML parser written in Rust.
Spatial Model Simulator with SBML Model
Simulator for SBML Models
Lecture SS 2022 - Introduction to various topics in Systems Biology
Parinsula is an interactive visual simulator of relatively isolated systems, which are a particular type of complex system.
Julia interface to BioMASS
The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.
CyberUnits is a cross-platform class library for rapid development of high-performance computer simulations in life sciences. It supports modelling for biomedical cybernetics and systems biology with Object Pascal.
Ecosystem of Machine-maintained Models with Automated Analysis
A package for researchers working with biological oscillations
Patient-Specific Modeling in Python
A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).
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