Version 1.10.0

Provide genome ploidy in parascopy depth.

Version 1.9.9

Minor bug fixes.

Version 1.9.7

Minor bug fixes:

• Allow chromosome names to include colon symbol (:),
• Replace deprecated np.bool with np.bool_.

Parascopy call command line changes:

• Temporarily remove --use-af argument,
• Two values for arguments --base-qual and --error-rate.

Version 1.9.1

Small fixes.

Version 1.9.0

Variant calling and much more!

Version 1.7.6

Several bug fixes

Version 1.7.4

• Improved EM-algorithm running time (searching for reliable PSVs),
• Warn about multiple primary alignments for a single read,
• In the final HMM iteration (aggregate copy number detection), use full set of hidden states.

Version 1.7.3

Bug fixes

Version 1.7.1

Parascopy pretable is now asymmetric by default.

Version 1.6.2

Minor bug fix