Failing install fix

[davidkvcs]

When doing pip install -e . I had to add py_modules=[], in the setup.py file to avoid the error below.

ERROR: Command errored out with exit status 1:
command: /homes/kovacs/anaconda3/envs/tureckova_dgk1_vnet/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/homes/kovacs/project_scripts/hnc_segmentation/tureckova_vnet/Abdomen-CT-Image-Segmentation/setup.py'"'"'; file='"'"'/homes/kovacs/project_scripts/hnc_segmentation/tureckova_vnet/Abdomen-CT-Image-Segmentation/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-yjk8gz6f
cwd: /homes/kovacs/project_scripts/hnc_segmentation/tureckova_vnet/Abdomen-CT-Image-Segmentation/
Complete output (14 lines):
error: Multiple top-level packages discovered in a flat-layout: ['nnunet', 'plans_files'].

To avoid accidental inclusion of unwanted files or directories,
setuptools will not proceed with this build.

If you are trying to create a single distribution with multiple packages
on purpose, you should not rely on automatic discovery.
Instead, consider the following options:

1. set up custom discovery (`find` directive with `include` or `exclude`)
2. use a `src-layout`
3. explicitly set `py_modules` or `packages` with a list of names

To find more information, look for "package discovery" on setuptools docs.
----------------------------------------

WARNING: Discarding file:///homes/kovacs/project_scripts/hnc_segmentation/tureckova_vnet/Abdomen-CT-Image-Segmentation. Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.