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requirements.txt
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requirements.txt
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accelerate==1.1.1
accelerator==2024.9.13
aiofiles==23.2.1
aiohappyeyeballs==2.4.3
aiohttp==3.11.7
aiosignal==1.3.1
annotated-types==0.7.0
anyio==4.6.2.post1
asttokens==2.4.1
async-timeout==5.0.1
attrs==24.2.0
bio==1.7.1
biopython==1.84
biothings-client==0.3.1
biotite==0.41.2
bottle==0.12.25
Brotli==1.1.0
certifi==2024.8.30
charset-normalizer==3.4.0
click==8.1.7
cloudpathlib==0.20.0
contourpy==1.3.1
cycler==0.12.1
datasets==3.1.0
decorator==5.1.1
dill==0.3.8
docker-pycreds==0.4.0
einops==0.8.0
esm==3.0.7.post1
exceptiongroup==1.2.2
executing==2.1.0
fake-useragent==1.5.1
fastapi==0.115.5
ffmpy==0.4.0
filelock==3.13.1
fonttools==4.55.0
frozenlist==1.5.0
fsspec==2024.2.0
gitdb==4.0.11
GitPython==3.1.43
gprofiler-official==1.0.0
gradio==5.6.0
gradio_client==1.4.3
h11==0.14.0
httpcore==1.0.7
httpx==0.27.2
huggingface-hub==0.26.2
idna==3.10
ipython==8.29.0
jedi==0.19.2
Jinja2==3.1.3
joblib==1.4.2
kiwisolver==1.4.7
lightning-utilities==0.11.9
lxml==5.3.0
markdown-it-py==3.0.0
MarkupSafe==2.1.5
matplotlib==3.9.2
matplotlib-inline==0.1.7
mdurl==0.1.2
mpmath==1.3.0
msgpack==1.1.0
msgpack-numpy==0.4.8
multidict==6.1.0
multiprocess==0.70.16
mygene==3.2.2
networkx==3.2.1
numpy==1.26.3
nvidia-cublas-cu12==12.1.3.1
nvidia-cuda-cupti-cu12==12.1.105
nvidia-cuda-nvrtc-cu12==12.1.105
nvidia-cuda-runtime-cu12==12.1.105
nvidia-cudnn-cu12==9.1.0.70
nvidia-cufft-cu12==11.0.2.54
nvidia-curand-cu12==10.3.2.106
nvidia-cusolver-cu12==11.4.5.107
nvidia-cusparse-cu12==12.1.0.106
nvidia-nccl-cu12==2.21.5
nvidia-nvjitlink-cu12==12.1.105
nvidia-nvtx-cu12==12.1.105
orjson==3.10.11
packaging==24.2
pandas==2.2.3
parso==0.8.4
pexpect==4.9.0
pillow==10.2.0
platformdirs==4.3.6
pooch==1.8.2
prompt_toolkit==3.0.48
propcache==0.2.0
protobuf==5.28.3
psutil==6.1.0
ptyprocess==0.7.0
pure_eval==0.2.3
pyarrow==18.0.0
pydantic==2.10.1
pydantic_core==2.27.1
pydub==0.25.1
pyg-lib==0.4.0+pt25cu121
Pygments==2.18.0
pyparsing==3.2.0
python-dateutil==2.9.0.post0
python-multipart==0.0.12
pytz==2024.2
PyYAML==6.0.2
regex==2024.11.6
requests==2.32.3
rich==13.9.4
ruff==0.8.0
safehttpx==0.1.1
safetensors==0.4.5
scikit-learn==1.5.2
scipy==1.14.1
semantic-version==2.10.0
sentencepiece==0.2.0
sentry-sdk==2.19.0
setproctitle==1.3.4
shellingham==1.5.4
six==1.16.0
smmap==5.0.1
sniffio==1.3.1
stack-data==0.6.3
starlette==0.41.3
sympy==1.13.1
tenacity==9.0.0
threadpoolctl==3.5.0
tokenizers==0.20.3
tomlkit==0.12.0
torch==2.5.1+cu121
torch-geometric==2.6.1
torch_cluster==1.6.3+pt25cu121
torch_scatter==2.1.2+pt25cu121
torch_sparse==0.6.18+pt25cu121
torch_spline_conv==1.2.2+pt25cu121
torchaudio==2.5.1+cu121
torchmetrics==1.6.0
torchtext==0.18.0
torchvision==0.20.1+cu121
tqdm==4.67.0
traitlets==5.14.3
transformers==4.46.3
triton==3.1.0
typer==0.13.1
typing_extensions==4.12.2
tzdata==2024.2
urllib3==2.2.3
uvicorn==0.32.1
waitress==3.0.2
wandb==0.18.7
wcwidth==0.2.13
websockets==12.0
xxhash==3.5.0
yarl==1.18.0