diff --git a/docs/releases/index.md b/docs/releases/index.md index 1402e86..85ae674 100644 --- a/docs/releases/index.md +++ b/docs/releases/index.md @@ -5,6 +5,7 @@ maxdepth: 3 --- 0.x (upcoming release) +0.4.0 0.3.1 0.3.0 0.2.0 diff --git a/docs/releases/ogstools-0.4.0.md b/docs/releases/ogstools-0.4.0.md new file mode 100644 index 0000000..727826a --- /dev/null +++ b/docs/releases/ogstools-0.4.0.md @@ -0,0 +1,138 @@ +# OGSTools 0.4.0 Release Notes + +## Overview + +Supports Python: 3.10, 3.11, 3.12. + +First release after integration of ogs6py. The state of ogs6py corresponds to the functionality of [v.403 of ogs6py](https://github.com/joergbuchwald/ogs6py/releases/tag/v.403) (only light API changes, see Features/Project file) + +## OGS + +[OpenGeoSys](https://www.opengeosys.org/) version: 6.5.3 + +## Migration strategy from ogs6py to ogstools + +The recommended strategy is: + +- Back up your environment with `pip freeze > yourfile.txt` +- Upgrade ogs6py to 0.403 first and resolve issues (see breaking changes). +- Uninstall ogs6py and install ogstools +- Remove `import ogs6py`. Add `import ogstools as ogs`. The former `OGS` becomes `Project` and function parameters of `OGS.__init__()` are now with lower case names. See example in Features + +## API changes + +### plot + +- renamed meshplotlib to plot +- renamed plot function to contourf +- renamed setup.p_min -> setup.vmin, setup.p_max -> setup.vmax +- added several setup options available as kwargs + +### variables + +- renamed propertylib to variables (to align with OpenGeoSys vocabulary) +- presets are now directly accessible as variables +- renamed presets to properties +- renamed Property class to Variable + +## meshlib + +- renamed aggregate function to time_aggregate +- renamed MeshSeries.read to MeshSeries.mesh + +## Features + +### ogs6py + +- new version with significant parts of the codebase rewritten. Changes visible to the user: + +#### example + +before: + +```python +import ogstools as ogs + +prj = ogs.Project(input_file="mechanics.prj", output_file="old_parameter_add.prj") +prj.add_block( + blocktag="parameter", + parent_xpath="./parameters", + taglist=["name", "type", "value"], + textlist=["density", "Constant", "1900"], +) +prj.write_input() +``` + +now: + +```python +import ogstools as ogs + +prj = ogs.Project(input_file="mechanics.prj", output_file="new_parameter_add.prj") +prj.parameters.add_parameter(name="density", type="Constant", value="1900") +prj.write_input() +``` + +- support for combining replacement- and build-method commands +- breaking changes: some methods renamed closer to project file tags: + +* `add_process_variable()` split-up into `add_secondary_variable()` and `add_process_variable()` +* `geo.add_geom()` -> `geometry.add_geometry()`, `timeloop` -> `time_loop` etc. + +- support for more MPL properties +- several bugfixes and tiny new features +- ## integration into ogstools + +### plot + +- Time slice plots can be created easily: filled contour plots of transient data along a sampling line ([example](https://ogs.ogs.xyz/tools/ogstools/auto_examples/howto_plot/plot_timeslice.html#)) + +![time_slice](https://ogs.ogs.xyz/tools/ogstools/_images/sphx_glr_plot_timeslice_001.png) + +- Variables now have default symbols (e.g. used for labels in plots) + +### Mesh and MeshSeries + +- Mesh can be created from a shapefile + +``` +mesh = ogs.Mesh.read(test_shapefile) +``` + +- Mesh can be remeshed with triangle + ![Mesh_triangle](https://ogs.ogs.xyz/tools/ogstools/_images/sphx_glr_plot_remeshing_002.png) +- MeshSeries has a performant algorithm for integration point tessellation called `MeshSeries.ip_tesselated()` - [example for analyzing integration point data](https://ogs.ogs.xyz/tools/ogstools/auto_examples/howto_postprocessing/plot_ipdata.html#sphx-glr-auto-examples-howto-postprocessing-plot-ipdata-py) +- MeshSeries allows multidimensional indexing on ndarrays + +```python +import ogstools as ogs + +ms = ogs.MeshSeries("filepath/filename_pvd_or_xdmf") +ms.data("darcy_velocity")[-2:, 1:4, :] # shape is(2, 3, 2) +result_mesh = ms[-1] +for mesh in ms: + print(mesh) +``` + +- Added function argument to Meshseries.animate functions has more flexible parameter that allow + 1. transformation of the mesh and + 1. customization of the plot +- Meshseries has domain_aggregate function (e.g. min/max of a variable per time step) + +### Project files + +- ogs6py added (this version corresponds to https://github.com/joergbuchwald/ogs6py/releases/tag/v.403) +- OGS class is renamed to Project +- Function parameters are with now lower case letters +- `project_file` is now `output_file` + +### Documentation, examples and more + +- Documentation got new structure of examples (now all organized under ogstools/examples/) +- pip requirements.txt files (of tested environment) are added for stable test environment reproduction (To be used by developers. Do not use it in your projects!) + +## Bugfixes + +- Several small fixes in plotting functions (visual) +- MeshSeries closes file handle to h5 file after reading is finished +- Dependency compatibility (e.g., remove restriction to matplotlib and relaxing requirements) diff --git a/pyproject.toml b/pyproject.toml index 9379407..8e80be5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -39,7 +39,7 @@ dependencies = [ "Pint>=0.22", "papermill>=2.4.0", "pandamesh>=0.2.1", # meshing algorithm changed with this version - "ogs>=6.5.2", + "ogs>=6.5.3", "typeguard>=4.0.0", "lxml>=4.6.0" ] diff --git a/requirements/requirements_allextras_py3_10.txt b/requirements/requirements_allextras_py3_10.txt index c7d8f44..839acbf 100644 --- a/requirements/requirements_allextras_py3_10.txt +++ b/requirements/requirements_allextras_py3_10.txt @@ -1,4 +1,5 @@ -aiohttp==3.9.5 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aiosignal==1.3.1 ansicolors==1.1.8 anyio==4.4.0 @@ -8,27 +9,27 @@ argon2-cffi-bindings==21.2.0 arrow==1.3.0 asttokens==2.4.1 async-timeout==4.0.3 -attrs==23.2.0 +attrs==24.2.0 beautifulsoup4==4.12.3 -black==24.4.2 +black==24.8.0 bleach==6.1.0 build==1.2.1 -certifi==2024.7.4 -cffi==1.16.0 +certifi==2024.8.30 +cffi==1.17.1 cfgv==3.4.0 charset-normalizer==3.3.2 click==8.1.7 cmocean==4.0.3 colorcet==3.1.0 comm==0.2.2 -contourpy==1.2.1 +contourpy==1.3.0 cycler==0.12.1 decorator==5.1.1 defusedxml==0.7.1 distlib==0.3.8 entrypoints==0.4 exceptiongroup==1.2.2 -executing==2.0.1 +executing==2.1.0 fastjsonschema==2.20.0 filelock==3.15.4 flexcache==0.3 @@ -40,10 +41,10 @@ geopandas==1.0.1 gmsh==4.13.1 h5py==3.11.0 identify==2.6.0 -idna==3.7 -imageio==2.34.2 -ipython==8.26.0 -ipywidgets==8.1.3 +idna==3.8 +imageio==2.35.1 +ipython==8.27.0 +ipywidgets==8.1.5 isoduration==20.11.0 jedi==0.19.1 Jinja2==3.1.4 @@ -54,22 +55,22 @@ jupyter-events==0.10.0 jupyter_client==8.6.2 jupyter_core==5.7.2 jupyter_server==2.14.2 -jupyter_server_proxy==4.3.0 +jupyter_server_proxy==4.4.0 jupyter_server_terminals==0.5.3 jupyterlab_pygments==0.3.0 -jupyterlab_widgets==3.0.11 -jupytext==1.16.3 -kiwisolver==1.4.5 -lxml==5.2.2 +jupyterlab_widgets==3.0.13 +jupytext==1.16.4 +kiwisolver==1.4.7 +lxml==5.3.0 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.9.1 +matplotlib==3.9.2 matplotlib-inline==0.1.7 mdit-py-plugins==0.4.1 mdurl==0.1.2 meshio==5.3.5 mistune==3.0.2 -more-itertools==10.3.0 +more-itertools==10.5.0 msgpack==1.0.8 multidict==6.0.5 mypy-extensions==1.0.0 @@ -78,12 +79,11 @@ nbconvert==7.16.4 nbformat==5.10.4 nest-asyncio==1.6.0 nodeenv==1.9.1 -numpy==2.0.1 -ogs==6.5.2 -ogs6py==0.402 +numpy==2.0.2 +ogs==6.5.3 overrides==7.7.0 packaging==24.1 -pandamesh==0.1.6 +pandamesh==0.2.1 pandas==2.2.2 pandocfilters==1.5.1 papermill==2.6.0 @@ -102,56 +102,55 @@ pure_eval==0.2.3 pycparser==2.22 Pygments==2.18.0 pyogrio==0.9.0 -pyparsing==3.1.2 +pyparsing==3.1.4 pyproj==3.6.1 pyproject_hooks==1.1.0 python-dateutil==2.9.0.post0 python-json-logger==2.0.7 pytz==2024.1 pyvista==0.44.1 -PyYAML==6.0.1 -pyzmq==26.0.3 +PyYAML==6.0.2 +pyzmq==26.2.0 referencing==0.35.1 requests==2.32.3 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 -rich==13.7.1 -rpds-py==0.19.1 -scipy==1.14.0 +rich==13.8.0 +rpds-py==0.20.0 +scipy==1.14.1 scooby==0.10.0 Send2Trash==1.8.3 -shapely==2.0.5 +shapely==2.0.6 simpervisor==1.0.0 six==1.16.0 sniffio==1.3.1 -soupsieve==2.5 +soupsieve==2.6 stack-data==0.6.3 tenacity==9.0.0 terminado==0.18.1 tinycss2==1.3.0 tomli==2.0.1 tornado==6.4.1 -tqdm==4.66.4 +tqdm==4.66.5 traitlets==5.14.3 trame==3.6.3 -trame-client==3.2.1 -trame-server==3.0.3 -trame-vtk==2.8.9 -trame-vuetify==2.6.2 +trame-client==3.2.5 +trame-server==3.1.2 +trame-vtk==2.8.10 +trame-vuetify==2.7.1 triangle==20230923 typeguard==4.3.0 -types-python-dateutil==2.9.0.20240316 +types-python-dateutil==2.9.0.20240906 typing_extensions==4.12.2 tzdata==2024.1 uri-template==1.3.0 urllib3==2.2.2 virtualenv==20.26.3 vtk==9.3.1 -VTUinterface==0.704 wcwidth==0.2.13 -webcolors==24.6.0 +webcolors==24.8.0 webencodings==0.5.1 websocket-client==1.8.0 -widgetsnbextension==4.0.11 -wslink==2.1.1 -yarl==1.9.4 +widgetsnbextension==4.0.13 +wslink==2.1.2 +yarl==1.9.11 diff --git a/requirements/requirements_allextras_py3_11.txt b/requirements/requirements_allextras_py3_11.txt index 5cce125..93c1a4f 100644 --- a/requirements/requirements_allextras_py3_11.txt +++ b/requirements/requirements_allextras_py3_11.txt @@ -1,4 +1,5 @@ -aiohttp==3.9.5 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aiosignal==1.3.1 ansicolors==1.1.8 anyio==4.4.0 @@ -7,26 +8,26 @@ argon2-cffi==23.1.0 argon2-cffi-bindings==21.2.0 arrow==1.3.0 asttokens==2.4.1 -attrs==23.2.0 +attrs==24.2.0 beautifulsoup4==4.12.3 -black==24.4.2 +black==24.8.0 bleach==6.1.0 build==1.2.1 -certifi==2024.7.4 -cffi==1.16.0 +certifi==2024.8.30 +cffi==1.17.1 cfgv==3.4.0 charset-normalizer==3.3.2 click==8.1.7 cmocean==4.0.3 colorcet==3.1.0 comm==0.2.2 -contourpy==1.2.1 +contourpy==1.3.0 cycler==0.12.1 decorator==5.1.1 defusedxml==0.7.1 distlib==0.3.8 entrypoints==0.4 -executing==2.0.1 +executing==2.1.0 fastjsonschema==2.20.0 filelock==3.15.4 flexcache==0.3 @@ -38,10 +39,10 @@ geopandas==1.0.1 gmsh==4.13.1 h5py==3.11.0 identify==2.6.0 -idna==3.7 -imageio==2.34.2 -ipython==8.26.0 -ipywidgets==8.1.3 +idna==3.8 +imageio==2.35.1 +ipython==8.27.0 +ipywidgets==8.1.5 isoduration==20.11.0 jedi==0.19.1 Jinja2==3.1.4 @@ -52,22 +53,22 @@ jupyter-events==0.10.0 jupyter_client==8.6.2 jupyter_core==5.7.2 jupyter_server==2.14.2 -jupyter_server_proxy==4.3.0 +jupyter_server_proxy==4.4.0 jupyter_server_terminals==0.5.3 jupyterlab_pygments==0.3.0 -jupyterlab_widgets==3.0.11 -jupytext==1.16.3 -kiwisolver==1.4.5 -lxml==5.2.2 +jupyterlab_widgets==3.0.13 +jupytext==1.16.4 +kiwisolver==1.4.7 +lxml==5.3.0 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.9.1 +matplotlib==3.9.2 matplotlib-inline==0.1.7 mdit-py-plugins==0.4.1 mdurl==0.1.2 meshio==5.3.5 mistune==3.0.2 -more-itertools==10.3.0 +more-itertools==10.5.0 msgpack==1.0.8 multidict==6.0.5 mypy-extensions==1.0.0 @@ -76,12 +77,11 @@ nbconvert==7.16.4 nbformat==5.10.4 nest-asyncio==1.6.0 nodeenv==1.9.1 -numpy==2.0.1 -ogs==6.5.2 -ogs6py==0.402 +numpy==2.0.2 +ogs==6.5.3 overrides==7.7.0 packaging==24.1 -pandamesh==0.1.6 +pandamesh==0.2.1 pandas==2.2.2 pandocfilters==1.5.1 papermill==2.6.0 @@ -100,55 +100,54 @@ pure_eval==0.2.3 pycparser==2.22 Pygments==2.18.0 pyogrio==0.9.0 -pyparsing==3.1.2 +pyparsing==3.1.4 pyproj==3.6.1 pyproject_hooks==1.1.0 python-dateutil==2.9.0.post0 python-json-logger==2.0.7 pytz==2024.1 pyvista==0.44.1 -PyYAML==6.0.1 -pyzmq==26.0.3 +PyYAML==6.0.2 +pyzmq==26.2.0 referencing==0.35.1 requests==2.32.3 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 -rich==13.7.1 -rpds-py==0.19.1 -scipy==1.14.0 +rich==13.8.0 +rpds-py==0.20.0 +scipy==1.14.1 scooby==0.10.0 Send2Trash==1.8.3 -shapely==2.0.5 +shapely==2.0.6 simpervisor==1.0.0 six==1.16.0 sniffio==1.3.1 -soupsieve==2.5 +soupsieve==2.6 stack-data==0.6.3 tenacity==9.0.0 terminado==0.18.1 tinycss2==1.3.0 tornado==6.4.1 -tqdm==4.66.4 +tqdm==4.66.5 traitlets==5.14.3 trame==3.6.3 -trame-client==3.2.1 -trame-server==3.0.3 -trame-vtk==2.8.9 -trame-vuetify==2.6.2 +trame-client==3.2.5 +trame-server==3.1.2 +trame-vtk==2.8.10 +trame-vuetify==2.7.1 triangle==20230923 typeguard==4.3.0 -types-python-dateutil==2.9.0.20240316 +types-python-dateutil==2.9.0.20240906 typing_extensions==4.12.2 tzdata==2024.1 uri-template==1.3.0 urllib3==2.2.2 virtualenv==20.26.3 vtk==9.3.1 -VTUinterface==0.704 wcwidth==0.2.13 -webcolors==24.6.0 +webcolors==24.8.0 webencodings==0.5.1 websocket-client==1.8.0 -widgetsnbextension==4.0.11 -wslink==2.1.1 -yarl==1.9.4 +widgetsnbextension==4.0.13 +wslink==2.1.2 +yarl==1.9.11 diff --git a/requirements/requirements_allextras_py3_12.txt b/requirements/requirements_allextras_py3_12.txt index dbc3da2..93c1a4f 100644 --- a/requirements/requirements_allextras_py3_12.txt +++ b/requirements/requirements_allextras_py3_12.txt @@ -1,4 +1,5 @@ -aiohttp==3.9.5 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aiosignal==1.3.1 ansicolors==1.1.8 anyio==4.4.0 @@ -7,26 +8,26 @@ argon2-cffi==23.1.0 argon2-cffi-bindings==21.2.0 arrow==1.3.0 asttokens==2.4.1 -attrs==23.2.0 +attrs==24.2.0 beautifulsoup4==4.12.3 -black==24.4.2 +black==24.8.0 bleach==6.1.0 build==1.2.1 -certifi==2024.7.4 -cffi==1.16.0 +certifi==2024.8.30 +cffi==1.17.1 cfgv==3.4.0 charset-normalizer==3.3.2 click==8.1.7 cmocean==4.0.3 colorcet==3.1.0 comm==0.2.2 -contourpy==1.2.1 +contourpy==1.3.0 cycler==0.12.1 decorator==5.1.1 defusedxml==0.7.1 distlib==0.3.8 entrypoints==0.4 -executing==2.0.1 +executing==2.1.0 fastjsonschema==2.20.0 filelock==3.15.4 flexcache==0.3 @@ -38,10 +39,10 @@ geopandas==1.0.1 gmsh==4.13.1 h5py==3.11.0 identify==2.6.0 -idna==3.7 -imageio==2.34.2 -ipython==8.26.0 -ipywidgets==8.1.3 +idna==3.8 +imageio==2.35.1 +ipython==8.27.0 +ipywidgets==8.1.5 isoduration==20.11.0 jedi==0.19.1 Jinja2==3.1.4 @@ -52,22 +53,22 @@ jupyter-events==0.10.0 jupyter_client==8.6.2 jupyter_core==5.7.2 jupyter_server==2.14.2 -jupyter_server_proxy==4.3.0 +jupyter_server_proxy==4.4.0 jupyter_server_terminals==0.5.3 jupyterlab_pygments==0.3.0 -jupyterlab_widgets==3.0.11 -jupytext==1.16.3 -kiwisolver==1.4.5 -lxml==5.2.2 +jupyterlab_widgets==3.0.13 +jupytext==1.16.4 +kiwisolver==1.4.7 +lxml==5.3.0 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.9.1 +matplotlib==3.9.2 matplotlib-inline==0.1.7 mdit-py-plugins==0.4.1 mdurl==0.1.2 meshio==5.3.5 mistune==3.0.2 -more-itertools==10.3.0 +more-itertools==10.5.0 msgpack==1.0.8 multidict==6.0.5 mypy-extensions==1.0.0 @@ -76,12 +77,11 @@ nbconvert==7.16.4 nbformat==5.10.4 nest-asyncio==1.6.0 nodeenv==1.9.1 -numpy==2.0.1 -ogs==6.5.2 -ogs6py==0.402 +numpy==2.0.2 +ogs==6.5.3 overrides==7.7.0 packaging==24.1 -pandamesh==0.1.6 +pandamesh==0.2.1 pandas==2.2.2 pandocfilters==1.5.1 papermill==2.6.0 @@ -92,7 +92,7 @@ pillow==10.4.0 Pint==0.24.3 platformdirs==4.2.2 pooch==1.8.2 -pre-commit==3.7.1 +pre-commit==3.8.0 prometheus_client==0.20.0 prompt_toolkit==3.0.47 ptyprocess==0.7.0 @@ -100,55 +100,54 @@ pure_eval==0.2.3 pycparser==2.22 Pygments==2.18.0 pyogrio==0.9.0 -pyparsing==3.1.2 +pyparsing==3.1.4 pyproj==3.6.1 pyproject_hooks==1.1.0 python-dateutil==2.9.0.post0 python-json-logger==2.0.7 pytz==2024.1 pyvista==0.44.1 -PyYAML==6.0.1 -pyzmq==26.0.3 +PyYAML==6.0.2 +pyzmq==26.2.0 referencing==0.35.1 requests==2.32.3 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 -rich==13.7.1 -rpds-py==0.19.1 -scipy==1.14.0 +rich==13.8.0 +rpds-py==0.20.0 +scipy==1.14.1 scooby==0.10.0 Send2Trash==1.8.3 -shapely==2.0.5 +shapely==2.0.6 simpervisor==1.0.0 six==1.16.0 sniffio==1.3.1 -soupsieve==2.5 +soupsieve==2.6 stack-data==0.6.3 -tenacity==8.5.0 +tenacity==9.0.0 terminado==0.18.1 tinycss2==1.3.0 tornado==6.4.1 -tqdm==4.66.4 +tqdm==4.66.5 traitlets==5.14.3 trame==3.6.3 -trame-client==3.2.1 -trame-server==3.0.3 -trame-vtk==2.8.9 -trame-vuetify==2.6.2 +trame-client==3.2.5 +trame-server==3.1.2 +trame-vtk==2.8.10 +trame-vuetify==2.7.1 triangle==20230923 typeguard==4.3.0 -types-python-dateutil==2.9.0.20240316 +types-python-dateutil==2.9.0.20240906 typing_extensions==4.12.2 tzdata==2024.1 uri-template==1.3.0 urllib3==2.2.2 virtualenv==20.26.3 vtk==9.3.1 -VTUinterface==0.704 wcwidth==0.2.13 -webcolors==24.6.0 +webcolors==24.8.0 webencodings==0.5.1 websocket-client==1.8.0 -widgetsnbextension==4.0.11 -wslink==2.1.1 -yarl==1.9.4 +widgetsnbextension==4.0.13 +wslink==2.1.2 +yarl==1.9.11 diff --git a/requirements/requirements_py3_10.txt b/requirements/requirements_py3_10.txt index 0a98b90..533323d 100644 --- a/requirements/requirements_py3_10.txt +++ b/requirements/requirements_py3_10.txt @@ -1,4 +1,5 @@ -aiohttp==3.9.5 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aiosignal==1.3.1 ansicolors==1.1.8 anyio==4.4.0 @@ -8,23 +9,23 @@ argon2-cffi-bindings==21.2.0 arrow==1.3.0 asttokens==2.4.1 async-timeout==4.0.3 -attrs==23.2.0 +attrs==24.2.0 beautifulsoup4==4.12.3 bleach==6.1.0 -certifi==2024.7.4 -cffi==1.16.0 +certifi==2024.8.30 +cffi==1.17.1 charset-normalizer==3.3.2 click==8.1.7 cmocean==4.0.3 colorcet==3.1.0 comm==0.2.2 -contourpy==1.2.1 +contourpy==1.3.0 cycler==0.12.1 decorator==5.1.1 defusedxml==0.7.1 entrypoints==0.4 exceptiongroup==1.2.2 -executing==2.0.1 +executing==2.1.0 fastjsonschema==2.20.0 flexcache==0.3 flexparser==0.3.1 @@ -34,10 +35,10 @@ frozenlist==1.4.1 geopandas==1.0.1 gmsh==4.13.1 h5py==3.11.0 -idna==3.7 -imageio==2.34.2 -ipython==8.26.0 -ipywidgets==8.1.3 +idna==3.8 +imageio==2.35.1 +ipython==8.27.0 +ipywidgets==8.1.5 isoduration==20.11.0 jedi==0.19.1 Jinja2==3.1.4 @@ -48,34 +49,33 @@ jupyter-events==0.10.0 jupyter_client==8.6.2 jupyter_core==5.7.2 jupyter_server==2.14.2 -jupyter_server_proxy==4.3.0 +jupyter_server_proxy==4.4.0 jupyter_server_terminals==0.5.3 jupyterlab_pygments==0.3.0 -jupyterlab_widgets==3.0.11 -jupytext==1.16.3 -kiwisolver==1.4.5 -lxml==5.2.2 +jupyterlab_widgets==3.0.13 +jupytext==1.16.4 +kiwisolver==1.4.7 +lxml==5.3.0 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.9.1 +matplotlib==3.9.2 matplotlib-inline==0.1.7 mdit-py-plugins==0.4.1 mdurl==0.1.2 meshio==5.3.5 mistune==3.0.2 -more-itertools==10.3.0 +more-itertools==10.5.0 msgpack==1.0.8 multidict==6.0.5 nbclient==0.10.0 nbconvert==7.16.4 nbformat==5.10.4 nest-asyncio==1.6.0 -numpy==2.0.1 -ogs==6.5.2 -ogs6py==0.402 +numpy==2.0.2 +ogs==6.5.3 overrides==7.7.0 packaging==24.1 -pandamesh==0.1.6 +pandamesh==0.2.1 pandas==2.2.2 pandocfilters==1.5.1 papermill==2.6.0 @@ -92,54 +92,53 @@ pure_eval==0.2.3 pycparser==2.22 Pygments==2.18.0 pyogrio==0.9.0 -pyparsing==3.1.2 +pyparsing==3.1.4 pyproj==3.6.1 python-dateutil==2.9.0.post0 python-json-logger==2.0.7 pytz==2024.1 pyvista==0.44.1 -PyYAML==6.0.1 -pyzmq==26.0.3 +PyYAML==6.0.2 +pyzmq==26.2.0 referencing==0.35.1 requests==2.32.3 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 -rich==13.7.1 -rpds-py==0.19.1 -scipy==1.14.0 +rich==13.8.0 +rpds-py==0.20.0 +scipy==1.14.1 scooby==0.10.0 Send2Trash==1.8.3 -shapely==2.0.5 +shapely==2.0.6 simpervisor==1.0.0 six==1.16.0 sniffio==1.3.1 -soupsieve==2.5 +soupsieve==2.6 stack-data==0.6.3 tenacity==9.0.0 terminado==0.18.1 tinycss2==1.3.0 tomli==2.0.1 tornado==6.4.1 -tqdm==4.66.4 +tqdm==4.66.5 traitlets==5.14.3 trame==3.6.3 -trame-client==3.2.1 -trame-server==3.0.3 -trame-vtk==2.8.9 -trame-vuetify==2.6.2 +trame-client==3.2.5 +trame-server==3.1.2 +trame-vtk==2.8.10 +trame-vuetify==2.7.1 triangle==20230923 typeguard==4.3.0 -types-python-dateutil==2.9.0.20240316 +types-python-dateutil==2.9.0.20240906 typing_extensions==4.12.2 tzdata==2024.1 uri-template==1.3.0 urllib3==2.2.2 vtk==9.3.1 -VTUinterface==0.704 wcwidth==0.2.13 -webcolors==24.6.0 +webcolors==24.8.0 webencodings==0.5.1 websocket-client==1.8.0 -widgetsnbextension==4.0.11 -wslink==2.1.1 -yarl==1.9.4 +widgetsnbextension==4.0.13 +wslink==2.1.2 +yarl==1.9.11 diff --git a/requirements/requirements_py3_11.txt b/requirements/requirements_py3_11.txt index bf93bbc..49c67f0 100644 --- a/requirements/requirements_py3_11.txt +++ b/requirements/requirements_py3_11.txt @@ -1,4 +1,5 @@ -aiohttp==3.9.5 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aiosignal==1.3.1 ansicolors==1.1.8 anyio==4.4.0 @@ -7,22 +8,22 @@ argon2-cffi==23.1.0 argon2-cffi-bindings==21.2.0 arrow==1.3.0 asttokens==2.4.1 -attrs==23.2.0 +attrs==24.2.0 beautifulsoup4==4.12.3 bleach==6.1.0 -certifi==2024.7.4 -cffi==1.16.0 +certifi==2024.8.30 +cffi==1.17.1 charset-normalizer==3.3.2 click==8.1.7 cmocean==4.0.3 colorcet==3.1.0 comm==0.2.2 -contourpy==1.2.1 +contourpy==1.3.0 cycler==0.12.1 decorator==5.1.1 defusedxml==0.7.1 entrypoints==0.4 -executing==2.0.1 +executing==2.1.0 fastjsonschema==2.20.0 flexcache==0.3 flexparser==0.3.1 @@ -32,10 +33,10 @@ frozenlist==1.4.1 geopandas==1.0.1 gmsh==4.13.1 h5py==3.11.0 -idna==3.7 -imageio==2.34.2 -ipython==8.26.0 -ipywidgets==8.1.3 +idna==3.8 +imageio==2.35.1 +ipython==8.27.0 +ipywidgets==8.1.5 isoduration==20.11.0 jedi==0.19.1 Jinja2==3.1.4 @@ -46,34 +47,33 @@ jupyter-events==0.10.0 jupyter_client==8.6.2 jupyter_core==5.7.2 jupyter_server==2.14.2 -jupyter_server_proxy==4.3.0 +jupyter_server_proxy==4.4.0 jupyter_server_terminals==0.5.3 jupyterlab_pygments==0.3.0 -jupyterlab_widgets==3.0.11 -jupytext==1.16.3 -kiwisolver==1.4.5 -lxml==5.2.2 +jupyterlab_widgets==3.0.13 +jupytext==1.16.4 +kiwisolver==1.4.7 +lxml==5.3.0 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.9.1 +matplotlib==3.9.2 matplotlib-inline==0.1.7 mdit-py-plugins==0.4.1 mdurl==0.1.2 meshio==5.3.5 mistune==3.0.2 -more-itertools==10.3.0 +more-itertools==10.5.0 msgpack==1.0.8 multidict==6.0.5 nbclient==0.10.0 nbconvert==7.16.4 nbformat==5.10.4 nest-asyncio==1.6.0 -numpy==2.0.1 -ogs==6.5.2 -ogs6py==0.402 +numpy==2.0.2 +ogs==6.5.3 overrides==7.7.0 packaging==24.1 -pandamesh==0.1.6 +pandamesh==0.2.1 pandas==2.2.2 pandocfilters==1.5.1 papermill==2.6.0 @@ -90,53 +90,52 @@ pure_eval==0.2.3 pycparser==2.22 Pygments==2.18.0 pyogrio==0.9.0 -pyparsing==3.1.2 +pyparsing==3.1.4 pyproj==3.6.1 python-dateutil==2.9.0.post0 python-json-logger==2.0.7 pytz==2024.1 pyvista==0.44.1 -PyYAML==6.0.1 -pyzmq==26.0.3 +PyYAML==6.0.2 +pyzmq==26.2.0 referencing==0.35.1 requests==2.32.3 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 -rich==13.7.1 -rpds-py==0.19.1 -scipy==1.14.0 +rich==13.8.0 +rpds-py==0.20.0 +scipy==1.14.1 scooby==0.10.0 Send2Trash==1.8.3 -shapely==2.0.5 +shapely==2.0.6 simpervisor==1.0.0 six==1.16.0 sniffio==1.3.1 -soupsieve==2.5 +soupsieve==2.6 stack-data==0.6.3 tenacity==9.0.0 terminado==0.18.1 tinycss2==1.3.0 tornado==6.4.1 -tqdm==4.66.4 +tqdm==4.66.5 traitlets==5.14.3 trame==3.6.3 -trame-client==3.2.1 -trame-server==3.0.3 -trame-vtk==2.8.9 -trame-vuetify==2.6.2 +trame-client==3.2.5 +trame-server==3.1.2 +trame-vtk==2.8.10 +trame-vuetify==2.7.1 triangle==20230923 typeguard==4.3.0 -types-python-dateutil==2.9.0.20240316 +types-python-dateutil==2.9.0.20240906 typing_extensions==4.12.2 tzdata==2024.1 uri-template==1.3.0 urllib3==2.2.2 vtk==9.3.1 -VTUinterface==0.704 wcwidth==0.2.13 -webcolors==24.6.0 +webcolors==24.8.0 webencodings==0.5.1 websocket-client==1.8.0 -widgetsnbextension==4.0.11 -wslink==2.1.1 -yarl==1.9.4 +widgetsnbextension==4.0.13 +wslink==2.1.2 +yarl==1.9.11 diff --git a/requirements/requirements_py3_12.txt b/requirements/requirements_py3_12.txt index 8cf32ed..49c67f0 100644 --- a/requirements/requirements_py3_12.txt +++ b/requirements/requirements_py3_12.txt @@ -1,4 +1,5 @@ -aiohttp==3.9.5 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aiosignal==1.3.1 ansicolors==1.1.8 anyio==4.4.0 @@ -7,22 +8,22 @@ argon2-cffi==23.1.0 argon2-cffi-bindings==21.2.0 arrow==1.3.0 asttokens==2.4.1 -attrs==23.2.0 +attrs==24.2.0 beautifulsoup4==4.12.3 bleach==6.1.0 -certifi==2024.7.4 -cffi==1.16.0 +certifi==2024.8.30 +cffi==1.17.1 charset-normalizer==3.3.2 click==8.1.7 cmocean==4.0.3 colorcet==3.1.0 comm==0.2.2 -contourpy==1.2.1 +contourpy==1.3.0 cycler==0.12.1 decorator==5.1.1 defusedxml==0.7.1 entrypoints==0.4 -executing==2.0.1 +executing==2.1.0 fastjsonschema==2.20.0 flexcache==0.3 flexparser==0.3.1 @@ -32,10 +33,10 @@ frozenlist==1.4.1 geopandas==1.0.1 gmsh==4.13.1 h5py==3.11.0 -idna==3.7 -imageio==2.34.2 -ipython==8.26.0 -ipywidgets==8.1.3 +idna==3.8 +imageio==2.35.1 +ipython==8.27.0 +ipywidgets==8.1.5 isoduration==20.11.0 jedi==0.19.1 Jinja2==3.1.4 @@ -46,34 +47,33 @@ jupyter-events==0.10.0 jupyter_client==8.6.2 jupyter_core==5.7.2 jupyter_server==2.14.2 -jupyter_server_proxy==4.3.0 +jupyter_server_proxy==4.4.0 jupyter_server_terminals==0.5.3 jupyterlab_pygments==0.3.0 -jupyterlab_widgets==3.0.11 -jupytext==1.16.3 -kiwisolver==1.4.5 -lxml==5.2.2 +jupyterlab_widgets==3.0.13 +jupytext==1.16.4 +kiwisolver==1.4.7 +lxml==5.3.0 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.9.1 +matplotlib==3.9.2 matplotlib-inline==0.1.7 mdit-py-plugins==0.4.1 mdurl==0.1.2 meshio==5.3.5 mistune==3.0.2 -more-itertools==10.3.0 +more-itertools==10.5.0 msgpack==1.0.8 multidict==6.0.5 nbclient==0.10.0 nbconvert==7.16.4 nbformat==5.10.4 nest-asyncio==1.6.0 -numpy==2.0.1 -ogs==6.5.2 -ogs6py==0.402 +numpy==2.0.2 +ogs==6.5.3 overrides==7.7.0 packaging==24.1 -pandamesh==0.1.6 +pandamesh==0.2.1 pandas==2.2.2 pandocfilters==1.5.1 papermill==2.6.0 @@ -90,53 +90,52 @@ pure_eval==0.2.3 pycparser==2.22 Pygments==2.18.0 pyogrio==0.9.0 -pyparsing==3.1.2 +pyparsing==3.1.4 pyproj==3.6.1 python-dateutil==2.9.0.post0 python-json-logger==2.0.7 pytz==2024.1 pyvista==0.44.1 -PyYAML==6.0.1 -pyzmq==26.0.3 +PyYAML==6.0.2 +pyzmq==26.2.0 referencing==0.35.1 requests==2.32.3 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 -rich==13.7.1 -rpds-py==0.19.1 -scipy==1.14.0 +rich==13.8.0 +rpds-py==0.20.0 +scipy==1.14.1 scooby==0.10.0 Send2Trash==1.8.3 -shapely==2.0.5 +shapely==2.0.6 simpervisor==1.0.0 six==1.16.0 sniffio==1.3.1 -soupsieve==2.5 +soupsieve==2.6 stack-data==0.6.3 -tenacity==8.5.0 +tenacity==9.0.0 terminado==0.18.1 tinycss2==1.3.0 tornado==6.4.1 -tqdm==4.66.4 +tqdm==4.66.5 traitlets==5.14.3 trame==3.6.3 -trame-client==3.2.1 -trame-server==3.0.3 -trame-vtk==2.8.9 -trame-vuetify==2.6.2 +trame-client==3.2.5 +trame-server==3.1.2 +trame-vtk==2.8.10 +trame-vuetify==2.7.1 triangle==20230923 typeguard==4.3.0 -types-python-dateutil==2.9.0.20240316 +types-python-dateutil==2.9.0.20240906 typing_extensions==4.12.2 tzdata==2024.1 uri-template==1.3.0 urllib3==2.2.2 vtk==9.3.1 -VTUinterface==0.704 wcwidth==0.2.13 -webcolors==24.6.0 +webcolors==24.8.0 webencodings==0.5.1 websocket-client==1.8.0 -widgetsnbextension==4.0.11 -wslink==2.1.1 -yarl==1.9.4 +widgetsnbextension==4.0.13 +wslink==2.1.2 +yarl==1.9.11