README.md

Multi-omics course project : Pipeline for single-cell RNA-seq and ATAC-seq data integration

Clone the repository

Open the terminal

cd ~/home/CourseData/Umran
git clone https://github.com/Iguaracypsousa/brain_AD.git

Download data

Data is stored in zenodo: [link] . For that, you will need to set the directory to the brain_AD and create data folder. Download the datasets required for this course into the data folder in brain_AD directory.

cd brain_AD
mkdir data

Setting up the environment

Open RStudio, and click on the brain_AD.RProj to initialise the project. On the console type:

renv::restore()