Running Atropos for 3-dimensional images.

Progress: 
  Iteration 0 (of 5): posterior probability = 0 (annealing temperature = 1)
  Iteration 1 (of 5): posterior probability = 0.596973 (annealing temperature = 1)

Writing output:
  Writing posterior image (class 1)
  Writing posterior image (class 2)
  Writing posterior image (class 3)

  AtroposSegmentationImageFilter (0x1185aa0)
    RTTI typeinfo:   itk::ants::AtroposSegmentationImageFilter<itk::Image<float, 3u>, itk::Image<unsigned int, 3u>, itk::Image<unsigned int, 3u> >
    Reference Count: 1
    Modified Time: 2952
    Debug: Off
    Object Name: 
    Observers: 
      IterationEvent(Command)
    Inputs: 
      Primary: (0x1193210) *
      _1: (0x118d500)
    Indexed Inputs: 
      0: Primary (0x1193210)
      1: _1 (0x118d500)
    Required Input Names: Primary
    NumberOfRequiredInputs: 1
    Outputs: 
      Primary: (0xbaa8c770)
    Indexed Outputs: 
      0: Primary (0xbaa8c770)
    NumberOfRequiredOutputs: 1
    Number Of Work Units: 80
    ReleaseDataFlag: Off
    ReleaseDataBeforeUpdateFlag: Off
    AbortGenerateData: Off
    Progress: 0
    Multithreader: 
      RTTI typeinfo:   itk::PoolMultiThreader
      Reference Count: 1
      Modified Time: 203
      Debug: Off
      Object Name: 
      Observers: 
        none
      Number of Work Units: 80
      Number of Threads: 20
      Global Maximum Number Of Threads: 128
      Global Default Number Of Threads: 20
      Global Default Threader Type: itk::MultiThreaderBaseEnums::Threader::Pool
      SingleMethod: 0
      SingleData: 0
    DynamicMultiThreading: On
    CoordinateTolerance: 1e-06
    DirectionTolerance: 1e-06
    Maximum number of iterations: 5
    Convergence threshold: 0.0001
    Number of tissue classes: 3
    Number of partial volume classes: 0
    Minimize memory usage: false
    Initialization strategy: Random
    Posterior probability formulation: Socrates
      initial annealing temperature = 1
      annealing rate = 1
      minimum annealing temperature = 0.1
    MRF parameters
      MRF smoothing factor = 1
      MRF radius = [1, 1, 1]
    Use asynchronous updating of the labels.
      ICM parameters
        maximum ICM code = 14
        maximum number of ICM iterations = 1
    No outlier handling.
    Tissue class 1: proportion = 0.335564
      HistogramParzenWindowsListSampleFunction (0x1197fa0)
        Sigma: 1
        Number of histogram bins: 32
    Tissue class 2: proportion = 0.333399
      HistogramParzenWindowsListSampleFunction (0x1196430)
        Sigma: 1
        Number of histogram bins: 32
    Tissue class 3: proportion = 0.330824
      HistogramParzenWindowsListSampleFunction (0x11964f0)
        Sigma: 1
        Number of histogram bins: 32
Elapsed time: 192.893

Running Atropos for 3-dimensional images.

Progress: 
  Iteration 0 (of 5): posterior probability = 0 (annealing temperature = 1)
  Iteration 1 (of 5): posterior probability = 0.596973 (annealing temperature = 1)

Writing output:
  Writing posterior image (class 1)
  Writing posterior image (class 2)
  Writing posterior image (class 3)

  AtroposSegmentationImageFilter (0x29c4aa0)
    RTTI typeinfo:   itk::ants::AtroposSegmentationImageFilter<itk::Image<float, 3u>, itk::Image<unsigned int, 3u>, itk::Image<unsigned int, 3u> >
    Reference Count: 1
    Modified Time: 2952
    Debug: Off
    Object Name: 
    Observers: 
      IterationEvent(Command)
    Inputs: 
      Primary: (0x29d2210) *
      _1: (0x29cc500)
    Indexed Inputs: 
      0: Primary (0x29d2210)
      1: _1 (0x29cc500)
    Required Input Names: Primary
    NumberOfRequiredInputs: 1
    Outputs: 
      Primary: (0xaae41860)
    Indexed Outputs: 
      0: Primary (0xaae41860)
    NumberOfRequiredOutputs: 1
    Number Of Work Units: 80
    ReleaseDataFlag: Off
    ReleaseDataBeforeUpdateFlag: Off
    AbortGenerateData: Off
    Progress: 0
    Multithreader: 
      RTTI typeinfo:   itk::PoolMultiThreader
      Reference Count: 1
      Modified Time: 203
      Debug: Off
      Object Name: 
      Observers: 
        none
      Number of Work Units: 80
      Number of Threads: 20
      Global Maximum Number Of Threads: 128
      Global Default Number Of Threads: 20
      Global Default Threader Type: itk::MultiThreaderBaseEnums::Threader::Pool
      SingleMethod: 0
      SingleData: 0
    DynamicMultiThreading: On
    CoordinateTolerance: 1e-06
    DirectionTolerance: 1e-06
    Maximum number of iterations: 5
    Convergence threshold: 0.0001
    Number of tissue classes: 3
    Number of partial volume classes: 0
    Minimize memory usage: false
    Initialization strategy: Random
    Posterior probability formulation: Socrates
      initial annealing temperature = 1
      annealing rate = 1
      minimum annealing temperature = 0.1
    MRF parameters
      MRF smoothing factor = 0.1
      MRF radius = [1, 1, 1]
    Use asynchronous updating of the labels.
      ICM parameters
        maximum ICM code = 14
        maximum number of ICM iterations = 1
    No outlier handling.
    Tissue class 1: proportion = 0.324908
      HistogramParzenWindowsListSampleFunction (0x29d6f80)
        Sigma: 1
        Number of histogram bins: 32
    Tissue class 2: proportion = 0.325299
      HistogramParzenWindowsListSampleFunction (0x29d55b0)
        Sigma: 1
        Number of histogram bins: 32
    Tissue class 3: proportion = 0.324951
      HistogramParzenWindowsListSampleFunction (0x29d5670)
        Sigma: 1
        Number of histogram bins: 32
Elapsed time: 194.617

Running Atropos for 3-dimensional images.

Progress: 
  Iteration 0 (of 5): posterior probability = 0 (annealing temperature = 1)
  Iteration 1 (of 5): posterior probability = 0.596973 (annealing temperature = 1)

Writing output:
  Writing posterior image (class 1)
  Writing posterior image (class 2)
  Writing posterior image (class 3)

  AtroposSegmentationImageFilter (0x1fc9aa0)
    RTTI typeinfo:   itk::ants::AtroposSegmentationImageFilter<itk::Image<float, 3u>, itk::Image<unsigned int, 3u>, itk::Image<unsigned int, 3u> >
    Reference Count: 1
    Modified Time: 2952
    Debug: Off
    Object Name: 
    Observers: 
      IterationEvent(Command)
    Inputs: 
      Primary: (0x1fd7210) *
      _1: (0x1fd1500)
    Indexed Inputs: 
      0: Primary (0x1fd7210)
      1: _1 (0x1fd1500)
    Required Input Names: Primary
    NumberOfRequiredInputs: 1
    Outputs: 
      Primary: (0xbb8cb7e0)
    Indexed Outputs: 
      0: Primary (0xbb8cb7e0)
    NumberOfRequiredOutputs: 1
    Number Of Work Units: 80
    ReleaseDataFlag: Off
    ReleaseDataBeforeUpdateFlag: Off
    AbortGenerateData: Off
    Progress: 0
    Multithreader: 
      RTTI typeinfo:   itk::PoolMultiThreader
      Reference Count: 1
      Modified Time: 203
      Debug: Off
      Object Name: 
      Observers: 
        none
      Number of Work Units: 80
      Number of Threads: 20
      Global Maximum Number Of Threads: 128
      Global Default Number Of Threads: 20
      Global Default Threader Type: itk::MultiThreaderBaseEnums::Threader::Pool
      SingleMethod: 0
      SingleData: 0
    DynamicMultiThreading: On
    CoordinateTolerance: 1e-06
    DirectionTolerance: 1e-06
    Maximum number of iterations: 5
    Convergence threshold: 0.0001
    Number of tissue classes: 3
    Number of partial volume classes: 0
    Minimize memory usage: false
    Initialization strategy: Random
    Posterior probability formulation: Socrates
      initial annealing temperature = 1
      annealing rate = 1
      minimum annealing temperature = 0.1
    MRF parameters
      MRF smoothing factor = 1
      MRF radius = [1, 1, 1]
    Use asynchronous updating of the labels.
      ICM parameters
        maximum ICM code = 14
        maximum number of ICM iterations = 1
    No outlier handling.
    Tissue class 1: proportion = 0.332514
      HistogramParzenWindowsListSampleFunction (0x1fdc000)
        Sigma: 1
        Number of histogram bins: 32
    Tissue class 2: proportion = 0.333663
      HistogramParzenWindowsListSampleFunction (0x1fda430)
        Sigma: 1
        Number of histogram bins: 32
    Tissue class 3: proportion = 0.333607
      HistogramParzenWindowsListSampleFunction (0x1fda4f0)
        Sigma: 1
        Number of histogram bins: 32
Elapsed time: 197.923

Running Atropos for 3-dimensional images.

Progress: 
  Iteration 0 (of 5): posterior probability = 0 (annealing temperature = 1)
  Iteration 1 (of 5): posterior probability = 0.596973 (annealing temperature = 1)

Writing output:
  Writing posterior image (class 1)
  Writing posterior image (class 2)
  Writing posterior image (class 3)

  AtroposSegmentationImageFilter (0x1107aa0)
    RTTI typeinfo:   itk::ants::AtroposSegmentationImageFilter<itk::Image<float, 3u>, itk::Image<unsigned int, 3u>, itk::Image<unsigned int, 3u> >
    Reference Count: 1
    Modified Time: 407268300
    Debug: Off
    Object Name: 
    Observers: 
      IterationEvent(Command)
    Inputs: 
      Primary: (0x1115210) *
      _1: (0x110f500)
    Indexed Inputs: 
      0: Primary (0x1115210)
      1: _1 (0x110f500)
    Required Input Names: Primary
    NumberOfRequiredInputs: 1
    Outputs: 
      Primary: (0x66c59580)
    Indexed Outputs: 
      0: Primary (0x66c59580)
    NumberOfRequiredOutputs: 1
    Number Of Work Units: 80
    ReleaseDataFlag: Off
    ReleaseDataBeforeUpdateFlag: Off
    AbortGenerateData: Off
    Progress: 0
    Multithreader: 
      RTTI typeinfo:   itk::PoolMultiThreader
      Reference Count: 1
      Modified Time: 203
      Debug: Off
      Object Name: 
      Observers: 
        none
      Number of Work Units: 80
      Number of Threads: 20
      Global Maximum Number Of Threads: 128
      Global Default Number Of Threads: 20
      Global Default Threader Type: itk::MultiThreaderBaseEnums::Threader::Pool
      SingleMethod: 0
      SingleData: 0
    DynamicMultiThreading: On
    CoordinateTolerance: 1e-06
    DirectionTolerance: 1e-06
    Maximum number of iterations: 5
    Convergence threshold: 0.0001
    Number of tissue classes: 3
    Number of partial volume classes: 0
    Minimize memory usage: false
    Initialization strategy: K means clustering
    Posterior probability formulation: Socrates
      initial annealing temperature = 1
      annealing rate = 1
      minimum annealing temperature = 0.1
    MRF parameters
      MRF smoothing factor = 1
      MRF radius = [1, 1, 1]
    Use asynchronous updating of the labels.
      ICM parameters
        maximum ICM code = 14
        maximum number of ICM iterations = 1
    No outlier handling.
    Tissue class 1: proportion = 0.596973
      HistogramParzenWindowsListSampleFunction (0x111a000)
        Sigma: 1
        Number of histogram bins: 32
    Tissue class 2: proportion = 0.0364788
      HistogramParzenWindowsListSampleFunction (0x1118430)
        Sigma: 1
        Number of histogram bins: 32
    Tissue class 3: proportion = 0.0153113
      HistogramParzenWindowsListSampleFunction (0x11184f0)
        Sigma: 1
        Number of histogram bins: 32
Elapsed time: 181.092