From 7b818d248620d1634bad3551df5da63fed931cc6 Mon Sep 17 00:00:00 2001 From: Dominik Moritz Date: Wed, 30 Oct 2024 17:50:51 -0400 Subject: [PATCH 1/6] ci: setup build/publish with uv --- .github/workflows/test.yml | 28 +- README.md | 4 +- package.json | 2 +- packages/duckdb-server/.gitignore | 2 + packages/duckdb-server/README.md | 16 +- packages/duckdb-server/package.json | 7 +- packages/duckdb-server/pkg/server.py | 8 +- .../duckdb-server/pkg/tests/test_query.py | 5 +- packages/duckdb-server/pyproject.toml | 48 +- packages/duckdb-server/uv.lock | 670 ++++++ packages/widget/.gitignore | 1 + packages/widget/README.md | 12 +- packages/widget/package.json | 7 +- packages/widget/pyproject.toml | 28 +- packages/widget/uv.lock | 1961 +++++++++++++++++ 15 files changed, 2720 insertions(+), 79 deletions(-) create mode 100644 packages/duckdb-server/uv.lock create mode 100644 packages/widget/uv.lock diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 7844acb9..cad3b9a8 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -41,29 +41,29 @@ jobs: steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 + - uses: astral-sh/setup-uv@v3 with: - python-version-file: ".python-version" - cache: "pip" - cache-dependency-path: "**/pyproject.toml" - - - name: Install dependencies - run: | - python -m pip install --upgrade pip - pip install hatch + version: ">=0.4.0" + enable-cache: true + cache-dependency-glob: "**/pyproject.toml" - name: Build and lint Widget run: | cd packages/widget - hatch build - hatch fmt --check + + uv build + uv run ruff check + uv run ruff format --check - name: Build, lint, and test Server run: | cd packages/duckdb-server - hatch build - hatch fmt --check - hatch run test:cov + + uv build + uv run ruff check + uv run ruff format --check + uv run mypy + uv run --with pytest-cov pytest --cov-report=term-missing --color=yes --cov=pkg rust: name: Test in Rust diff --git a/README.md b/README.md index 9016bfe2..129e35f1 100644 --- a/README.md +++ b/README.md @@ -70,8 +70,8 @@ To run local interactive examples: To launch a local DuckDB server: -* Install [hatch](https://hatch.pypa.io/latest/install/), if not already present. -* Run `npm run server` to launch the [`duckdb-server`](https://github.com/uwdata/mosaic/tree/main/packages/duckdb-server). This runs the server in development mode, so the server will restart if you change its code. +* Install [uv](https://docs.astral.sh/uv/), if not already present. +* Run `npm run server` to launch the [`duckdb-server`](https://github.com/uwdata/mosaic/tree/main/packages/duckdb-server). To use Mosaic with DuckDB Python in Jupyter Notebooks: diff --git a/package.json b/package.json index 2abe81ef..f6e6c526 100644 --- a/package.json +++ b/package.json @@ -18,7 +18,7 @@ "build": "lerna run build", "lint": "lerna run lint", "test": "lerna run test", - "server": "cd packages/duckdb-server && hatch run serve", + "server": "cd packages/duckdb-server && uv run duckdb-server", "server:rust": "cd packages/duckdb-server-rust && cargo run", "server:node": "nodemon packages/duckdb/bin/run-server.js", "dev": "vite", diff --git a/packages/duckdb-server/.gitignore b/packages/duckdb-server/.gitignore index 4e3f4d47..49c441e7 100644 --- a/packages/duckdb-server/.gitignore +++ b/packages/duckdb-server/.gitignore @@ -2,5 +2,7 @@ dist __pycache__ .ruff_cache .pytest_cache +.mypy_cache .coverage +.venv diff --git a/packages/duckdb-server/README.md b/packages/duckdb-server/README.md index e1e70110..9f09c191 100644 --- a/packages/duckdb-server/README.md +++ b/packages/duckdb-server/README.md @@ -8,21 +8,25 @@ _Note:_ This package provides a local DuckDB server. To instead use DuckDB-WASM ## Installation and usage -We recommend running the server in an isolated environment with [pipx](https://github.com/pypa/pipx). For example, to directly run the server, use: +We recommend running the server in an isolated environment with [uvx](https://docs.astral.sh/uv/). For example, to directly run the server, use: ```bash -pipx run duckdb-server +uvx duckdb-server ``` Alternatively, you can install the server with `pip install duckdb-server`. Then you can start the server with `duckdb-server`. ## Developer Setup -We use [hatch](https://hatch.pypa.io/latest/) to manage our development setup. +We use [uv](https://docs.astral.sh/uv/) to manage our development setup. -Start the server in development with `hatch run serve`. The server restarts when you change the code. +Start the server with `uv run duckdb-server`. The server will not restart when the code changes. -To run the tests, use `hatch run test:cov`. +Start the server in development with `watchmedo auto-restart --pattern '*.py' --recursive --signal SIGTERM python pkg/__main__.py"`. The server restarts when you change the code. + +Run `uv run ruff check --fix` and `uv run ruff format` to lint the code. + +To run the tests, use `uv run pytest`. To set up a local certificate for SSL, use https://github.com/FiloSottile/mkcert. @@ -54,4 +58,4 @@ Loads the bundled results. ## Publishing -Run the build with `hatch build`. Then publish with `hatch publish`. We publish using tokens so when asked, set the username to `__token__` and then use your token as the password. Alternatively, create a [`.pypirc` file](https://packaging.python.org/en/latest/guides/distributing-packages-using-setuptools/#create-an-account). +Run the build with `uv build`. Then publish with `uvx twine upload --skip-existing dist/*`. We publish using tokens so when asked, set the username to `__token__` and then use your token as the password. Alternatively, create a [`.pypirc` file](https://packaging.python.org/en/latest/guides/distributing-packages-using-setuptools/#create-an-account). diff --git a/packages/duckdb-server/package.json b/packages/duckdb-server/package.json index 5a9b3c01..e4e1bd5c 100644 --- a/packages/duckdb-server/package.json +++ b/packages/duckdb-server/package.json @@ -3,8 +3,9 @@ "version": "0.11.0", "private": true, "scripts": { - "prepublishOnly": "rimraf dist && mkdir dist && hatch run test:cov && hatch fmt --check && hatch build", - "publish": "hatch publish --user __token__", - "release": "npm run prepublishOnly && npm run publish" + "prepublishOnly": "uv run pytest && uv run ruff check && uv run ruff format --check", + "publish": "uv build && uvx twine upload --skip-existing dist/*", + "release": "npm run prepublishOnly && npm run publish", + "clean": "rimraf dist" } } diff --git a/packages/duckdb-server/pkg/server.py b/packages/duckdb-server/pkg/server.py index f0339615..78ea3b9f 100644 --- a/packages/duckdb-server/pkg/server.py +++ b/packages/duckdb-server/pkg/server.py @@ -94,7 +94,9 @@ def handle_query(handler: Handler, con, cache, query): json = retrieve(cache, query, partial(get_json, con)) handler.json(json) elif command == "create-bundle": - create_bundle(con, cache, query.get("queries"), BUNDLE_DIR / query.get("name")) + create_bundle( + con, cache, query.get("queries"), BUNDLE_DIR / query.get("name") + ) handler.done() elif command == "load-bundle": load_bundle(con, cache, BUNDLE_DIR / query.get("name")) @@ -164,7 +166,9 @@ async def http_handler(res, req): { "compression": CompressOptions.SHARED_COMPRESSOR, "message": ws_message, - "drain": lambda ws: logger.warning(f"WebSocket backpressure: {ws.get_buffered_amount()}"), + "drain": lambda ws: logger.warning( + f"WebSocket backpressure: {ws.get_buffered_amount()}" + ), }, ) diff --git a/packages/duckdb-server/pkg/tests/test_query.py b/packages/duckdb-server/pkg/tests/test_query.py index 518139cc..28fb3e12 100644 --- a/packages/duckdb-server/pkg/tests/test_query.py +++ b/packages/duckdb-server/pkg/tests/test_query.py @@ -7,7 +7,10 @@ def test_key(): - assert get_key("SELECT 1", "arrow") == "e004ebd5b5532a4b85984a62f8ad48a81aa3460c1ca07701f386135d72cdecf5.arrow" + assert ( + get_key("SELECT 1", "arrow") + == "e004ebd5b5532a4b85984a62f8ad48a81aa3460c1ca07701f386135d72cdecf5.arrow" + ) def test_query_json(): diff --git a/packages/duckdb-server/pyproject.toml b/packages/duckdb-server/pyproject.toml index eaea0352..f8d573ea 100644 --- a/packages/duckdb-server/pyproject.toml +++ b/packages/duckdb-server/pyproject.toml @@ -1,7 +1,3 @@ -[build-system] -requires = ["hatchling"] -build-backend = "hatchling.build" - [project] name = "duckdb-server" description = "A DuckDB server for Mosaic" @@ -23,30 +19,19 @@ duckdb-server = "pkg.__main__:serve" [project.urls] homepage = "https://github.com/uwdata/mosaic" -[project.optional-dependencies] -dev = [ - "watchdog[watchmedo]" -] - -[tool.hatch.envs.default] -python = "3.11" -features = ["dev"] -installer = "uv" - -[tool.hatch.envs.default.scripts] -serve = "watchmedo auto-restart --pattern '*.py' --recursive --signal SIGTERM python pkg/__main__.py" +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" -[tool.hatch.envs.test] -installer = "uv" -dependencies = [ - "coverage[toml]", - "pytest", - "pytest-cov", +[tool.uv] +dev-dependencies = [ + "watchdog[watchmehatch]", + "mypy>=1.11.1", + "pytest>=7.4.4", + "ruff>=0.6.1", + "types-ujson", ] -[tool.hatch.envs.test.scripts] -cov = 'pytest --cov-report=term-missing --cov-config=pyproject.toml --cov=pkg' - [tool.hatch.build.targets.wheel] packages = ["pkg"] @@ -54,5 +39,16 @@ packages = ["pkg"] path = "package.json" pattern = "\"version\": \"(?P.+?)\"" +# https://github.com/charliermarsh/ruff [tool.ruff] -lint.ignore = ["G004", "TRY301", "EM102", "EM101", "TRY003", "FBT002", "S608", "TRY002", "ARG001"] +src = ["pkg"] + +[tool.ruff.lint] +pydocstyle = { convention = "numpy" } +ignore = ["G004", "TRY301", "EM102", "EM101", "TRY003", "FBT002", "S608", "TRY002", "ARG001"] + +# https://mypy.readthedocs.io/en/stable/config_file.html +[tool.mypy] +files = "pkg/**/*.py" +strict = false +ignore_missing_imports = true diff --git a/packages/duckdb-server/uv.lock b/packages/duckdb-server/uv.lock new file mode 100644 index 00000000..b727ea6c --- /dev/null +++ b/packages/duckdb-server/uv.lock @@ -0,0 +1,670 @@ +version = 1 +requires-python = ">=3.9" +resolution-markers = [ + "python_full_version < '3.11'", + "python_full_version == '3.11.*'", + "python_full_version >= '3.12'", +] + +[[package]] +name = "cffi" +version = "1.17.1" +source = { registry = "https://pypi.org/simple" } +dependencies = [ + { name = "pycparser" }, +] +sdist = { url = "https://files.pythonhosted.org/packages/fc/97/c783634659c2920c3fc70419e3af40972dbaf758daa229a7d6ea6135c90d/cffi-1.17.1.tar.gz", hash = "sha256:1c39c6016c32bc48dd54561950ebd6836e1670f2ae46128f67cf49e789c52824", size = 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documentation](https://uw ## Developer Setup -We use [hatch](https://hatch.pypa.io/latest/) to manage our development setup. +We use [uv](https://docs.astral.sh/uv/) to manage our development setup. -To activate the environment, run `hatch shell`. - -This should install the widget in development mode so you can start Jupyter. - -You can start Jupyter with `ANYWIDGET_HMR=1 jupyter lab --notebook-dir=../../dev/notebooks`. If you cannot import the widget module, make sure that your Jupyter uses the right environment. You can add your environment to Jupyter by running `python -m ipykernel install --user --name=mosaic` and then select `mosaic` in the Jupyter environment dropdown. +You can start Jupyter with `ANYWIDGET_HMR=1 uv run jupyter lab --notebook-dir=../../dev/notebooks`. Run `npm run build` to build the widget JavaScript code. If you want to live edit the widget code, run `npm run dev` in a separate terminal. +Run `uv run ruff check --fix` and `uv run ruff format` to lint the code. + ## Publishing -Run the build with `npm run build` and `hatch build`. Then publish with `hatch publish`. We publish using tokens so when asked, set the username to `__token__` and then use your token as the password. Alternatively, create a [`.pypirc` file](https://packaging.python.org/en/latest/guides/distributing-packages-using-setuptools/#create-an-account). +Run the build with `uv build`. Then publish with `uvx twine upload --skip-existing dist/*`. We publish using tokens so when asked, set the username to `__token__` and then use your token as the password. Alternatively, create a [`.pypirc` file](https://packaging.python.org/en/latest/guides/distributing-packages-using-setuptools/#create-an-account). diff --git a/packages/widget/package.json b/packages/widget/package.json index 746eb18b..a8e6ab12 100644 --- a/packages/widget/package.json +++ b/packages/widget/package.json @@ -14,9 +14,10 @@ "dev": "npm run build -- --watch", "test": "tsc -p jsconfig.json", "lint": "eslint src", - "prepublishOnly": "rimraf dist && mkdir dist && npm run test && npm run lint && hatch fmt --check && npm run build && hatch build", - "publish": "hatch publish --user __token__", - "release": "npm run prepublishOnly && npm run publish" + "prepublishOnly": "npm run test && npm run lint && uv run ruff check && uv run ruff format --check && npm run build", + "publish": "uv build && uvx twine upload --skip-existing dist/*", + "release": "npm run prepublishOnly && npm run publish", + "clean": "rimraf dist" }, "dependencies": { "@uwdata/mosaic-core": "^0.11.0", diff --git a/packages/widget/pyproject.toml b/packages/widget/pyproject.toml index e8ca2812..ba0701d4 100644 --- a/packages/widget/pyproject.toml +++ b/packages/widget/pyproject.toml @@ -1,7 +1,3 @@ -[build-system] -requires = ["hatchling"] -build-backend = "hatchling.build" - [project] name = "mosaic-widget" description = "A Jupyter widget for Mosaic" @@ -17,29 +13,33 @@ dependencies = [ [project.urls] homepage = "https://github.com/uwdata/mosaic" +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + [tool.hatch.build] only-packages = true artifacts = [ "mosaic_widget/static/" ] -[project.optional-dependencies] -dev = [ - "jupyterlab", +[tool.uv] +dev-dependencies = [ + "jupyterlab>=4.2.5", "pandas", "pyyaml", - "watchfiles" + "ruff>=0.6.2" ] -[tool.hatch.envs.default] -python = "3.11" -features = ["dev"] -installer = "uv" - [tool.hatch.version] path = "package.json" pattern = "\"version\": \"(?P.+?)\"" +# https://github.com/charliermarsh/ruff [tool.ruff] +src = 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run server` to launch the [`duckdb-server`](https://github.com/uwdata/mosaic/tree/main/packages/duckdb-server). This runs the server in development mode, so the server will restart if you change its code. To use Mosaic with DuckDB Python in Jupyter Notebooks: diff --git a/package.json b/package.json index f6e6c526..a55cdeb2 100644 --- a/package.json +++ b/package.json @@ -18,7 +18,7 @@ "build": "lerna run build", "lint": "lerna run lint", "test": "lerna run test", - "server": "cd packages/duckdb-server && uv run duckdb-server", + "server": "cd packages/duckdb-server && npm run dev", "server:rust": "cd packages/duckdb-server-rust && cargo run", "server:node": "nodemon packages/duckdb/bin/run-server.js", "dev": "vite", diff --git a/packages/duckdb-server/README.md b/packages/duckdb-server/README.md index 9f09c191..307b4134 100644 --- a/packages/duckdb-server/README.md +++ b/packages/duckdb-server/README.md @@ -22,7 +22,7 @@ We use [uv](https://docs.astral.sh/uv/) to manage our development setup. Start the server with `uv run duckdb-server`. The server will not restart when the code changes. -Start the server in development with `watchmedo auto-restart --pattern '*.py' --recursive --signal SIGTERM python pkg/__main__.py"`. The server restarts when you change the code. +Start the server in development with `npm run dev`. The server restarts when you change the code. Run `uv run ruff check --fix` and `uv run ruff format` to lint the code. diff --git a/packages/duckdb-server/package.json b/packages/duckdb-server/package.json index e4e1bd5c..c91ae46f 100644 --- a/packages/duckdb-server/package.json +++ b/packages/duckdb-server/package.json @@ -6,6 +6,7 @@ "prepublishOnly": "uv run pytest && uv run ruff check && uv run ruff format --check", "publish": "uv build && uvx twine upload --skip-existing dist/*", "release": "npm run prepublishOnly && npm run publish", + "dev": "uv run watchmedo auto-restart --pattern '*.py' --recursive --signal SIGTERM uv run duckdb-server", "clean": "rimraf dist" } } From 97aa3db180494da377a81a359ac3485a5424bccb Mon Sep 17 00:00:00 2001 From: Dominik Moritz Date: Wed, 30 Oct 2024 18:01:50 -0400 Subject: [PATCH 3/6] Update pyproject.toml Co-authored-by: Trevor Manz --- packages/duckdb-server/pyproject.toml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/packages/duckdb-server/pyproject.toml 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a/.github/workflows/test.yml b/.github/workflows/test.yml index cad3b9a8..a81e6a27 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -47,21 +47,19 @@ jobs: enable-cache: true cache-dependency-glob: "**/pyproject.toml" - - name: Build and lint Widget + - name: Format and lint run: | - cd packages/widget - - uv build uv run ruff check uv run ruff format --check - - name: Build, lint, and test Server + - name: Build widget + run: uv build --package duckdb-server + + - name: Build and test server run: | cd packages/duckdb-server uv build - uv run ruff check - uv run ruff format --check uv run mypy uv run --with pytest-cov pytest --cov-report=term-missing --color=yes --cov=pkg diff --git a/dev/notebooks/weather.ipynb b/dev/notebooks/weather.ipynb index 9bac5ba3..35954863 100644 --- a/dev/notebooks/weather.ipynb +++ b/dev/notebooks/weather.ipynb @@ -76,7 +76,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.8" + "version": "3.11.10" } }, "nbformat": 4, diff --git a/packages/duckdb-server/pyproject.toml b/packages/duckdb-server/pyproject.toml index 14f9ee89..843c9e12 100644 --- a/packages/duckdb-server/pyproject.toml +++ b/packages/duckdb-server/pyproject.toml @@ -39,14 +39,6 @@ packages = ["pkg"] path = "package.json" pattern = "\"version\": \"(?P.+?)\"" -# https://github.com/charliermarsh/ruff -[tool.ruff] -src = ["pkg"] - -[tool.ruff.lint] -pydocstyle = { convention = "numpy" } -ignore = ["G004", "TRY301", "EM102", "EM101", "TRY003", "FBT002", "S608", "TRY002", "ARG001"] - # https://mypy.readthedocs.io/en/stable/config_file.html [tool.mypy] files = "pkg/**/*.py" diff --git a/packages/widget/pyproject.toml b/packages/widget/pyproject.toml index 99b41af6..64eb49ed 100644 --- a/packages/widget/pyproject.toml +++ b/packages/widget/pyproject.toml @@ -34,12 +34,3 @@ dev = [ [tool.hatch.version] path = "package.json" pattern = "\"version\": \"(?P.+?)\"" - -# https://github.com/charliermarsh/ruff -[tool.ruff] -src = ["mosaic_widget"] -extend-include = ["*.ipynb"] - -[tool.ruff.lint] -pydocstyle = { convention = "numpy" } -ignore = ["G004", "TRY301", "EM102", "TRY003", "FBT002"] diff --git a/pyproject.toml b/pyproject.toml index cbef82dd..3873eaf4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -3,3 +3,11 @@ members = [ "packages/duckdb-server", "packages/widget" ] + +# https://github.com/charliermarsh/ruff +[tool.ruff] +extend-include = ["*.ipynb"] + +[tool.ruff.lint] +pydocstyle = { convention = "numpy" } +ignore = ["G004", "TRY301", "EM102", "EM101", "TRY003", "FBT002", "S608", "TRY002", "ARG001"]