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Support Local Singularity Images #600

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cmarkello opened this issue Aug 6, 2018 · 0 comments
Open

Support Local Singularity Images #600

cmarkello opened this issue Aug 6, 2018 · 0 comments
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@cmarkello
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A specific use-case for the NIH's Biowulf cluster where support for large-enough disk space for singularity runtime containers is needed for generating whole-genome graph reference indexes.

Currently the URL's specified for the containers in the config file do not have any prefix or marker to determine whether to treat a container URL as a local file URL or a URL to a remote repository. I propose adding a check for a prefix of "file://" for the given container tool URL to the singularity container calling functions src/toil_vg/singularity.py to support this feature.

@cmarkello cmarkello self-assigned this Aug 6, 2018
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