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A specific use-case for the NIH's Biowulf cluster where support for large-enough disk space for singularity runtime containers is needed for generating whole-genome graph reference indexes.
Currently the URL's specified for the containers in the config file do not have any prefix or marker to determine whether to treat a container URL as a local file URL or a URL to a remote repository. I propose adding a check for a prefix of "file://" for the given container tool URL to the singularity container calling functions src/toil_vg/singularity.py to support this feature.
The text was updated successfully, but these errors were encountered:
A specific use-case for the NIH's Biowulf cluster where support for large-enough disk space for singularity runtime containers is needed for generating whole-genome graph reference indexes.
Currently the URL's specified for the containers in the config file do not have any prefix or marker to determine whether to treat a container URL as a local file URL or a URL to a remote repository. I propose adding a check for a prefix of "file://" for the given container tool URL to the singularity container calling functions
src/toil_vg/singularity.py
to support this feature.The text was updated successfully, but these errors were encountered: