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Improve Schema Engine's TablesWithSize80 query #17066

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merged 13 commits into from
Oct 28, 2024

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@mattlord mattlord commented Oct 25, 2024

Description

With only the query change the manual test in #17059 passes. The reason that this impacts the OnlineDDL cutover is because:

  1. We have thousands of tables
  2. This made our I_S query that the tabletserver's Schema Engine uses to maintain a cache of the table schemas very slow
  3. The DDL that we do is done via the ApplySchema RPC, which tells the schema engine to reload its cache at the end, which uses the noted slow query in step 2. This causes the Schema Engine's cache to be reloaded while holding the mutex.
  4. OnlineDDL creates a sentry table (possibly leading to another Schema Engine reload) just before waiting for VReplication to catch up
  5. VReplication tries to process the next GTID and get the new sentry table’s columns from the Schema Engine cache when processing the TABLE_MAP event in order to build and cache the table plan, and blocks on eventually reading from the cache because the mutex is held in step 3
  6. VReplication cannot get the columns for the table in order to map the row event to the table's columns before the 10 second (by default) timeout that OnlineDDL uses when waiting for VReplication to catch up (default)

So because the modified query is ~ 260x faster than the original — with the original taking about 13000ms and the new one about 80ms (see below) — we are able to update the schema cache and read the current tables schema for vreplication within the relatively default short timeout that OnlineDDL uses when waiting for vreplication to reach the position where the primary was.

Using the manual test from the issue again, we can compare the query times:

command mysql -u root --socket ${VTDATAROOT}/vt_0000000$(vtctldclient GetTablets --keyspace commerce --tablet-type primary --shard "0" | awk '{print $1}' | cut -d- -f2 | bc)/mysql.sock vt_commerce 

mysql> SELECT t.table_name, t.table_type, UNIX_TIMESTAMP(t.create_time), t.table_comment, SUM(i.file_size), SUM(i.allocated_size) FROM information_schema.tables t LEFT JOIN information_schema.innodb_tablespaces i ON i.name LIKE CONCAT(t.table_schema, '/', t.table_name, IF(t.create_options <=> 'partitioned', '#p#%', '')) COLLATE utf8mb3_general_ci WHERE t.table_schema = database() GROUP BY t.table_schema, t.table_name, t.table_type, t.create_time, t.table_comment;
...
3004 rows in set (13.43 sec)

mysql> SELECT t.table_name,     t.table_type,     UNIX_TIMESTAMP(t.create_time),     t.table_comment,     SUM(i.file_size),     SUM(i.allocated_size)   FROM information_schema.tables t   LEFT JOIN (SELECT name, file_size, allocated_size FROM information_schema.innodb_tablespaces WHERE name LIKE CONCAT(database(), '/%')) i   ON i.name = CONCAT(t.table_schema, '/', t.table_name) COLLATE utf8mb3_general_ci   WHERE     t.table_schema = database() AND IFNULL(t.create_options, '') NOT LIKE '%partitioned%'   GROUP BY     t.table_schema, t.table_name, t.table_type, t.create_time, t.table_comment UNION ALL SELECT t.table_name,     t.table_type,     UNIX_TIMESTAMP(t.create_time),     t.table_comment,     SUM(i.file_size),     SUM(i.allocated_size)   FROM information_schema.tables t   LEFT JOIN (SELECT name, file_size, allocated_size FROM information_schema.innodb_tablespaces WHERE name LIKE CONCAT(database(), '/%')) i     ON i.name LIKE (CONCAT(t.table_schema, '/', t.table_name, '#p#%') COLLATE utf8mb3_general_ci)   WHERE     t.table_schema = database() AND t.create_options LIKE '%partitioned%'   GROUP BY     t.table_schema, t.table_name, t.table_type, t.create_time, t.table_comment;
...
3004 rows in set (0.05 sec)

With only the timeout related changes the manual test in #17059 ALSO passes. The reason being that we're able to get past our schema reload work and reach the desired position within the larger timeout (the query blocking us takes ~ 13 seconds).

So we have two fixes for the underlying issue that not only solves the OnlineDDL specific aspects but also makes Vitess much more efficient overall when there are thousands of tables.

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  • "Backport to:" labels have been added if this change should be back-ported to release branches
  • If this change is to be back-ported to previous releases, a justification is included in the PR description
  • Tests were added or are not required
  • Did the new or modified tests pass consistently locally and on CI?
  • Documentation was added or is not required

This avoids the table scan on <temporary> stage from the query
execution in the middle here:
EXPLAIN: -> Filter: (`TABLE_NAME` like 'trb3%')  (actual time=1030..1030 rows=1 loops=1)
    -> Table scan on <temporary>  (actual time=1030..1030 rows=3005 loops=1)
        -> Aggregate using temporary table  (actual time=1030..1030 rows=3005 loops=1)
...

Signed-off-by: Matt Lord <mattalord@gmail.com>
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@vitess-bot vitess-bot bot added NeedsBackportReason If backport labels have been applied to a PR, a justification is required NeedsDescriptionUpdate The description is not clear or comprehensive enough, and needs work NeedsIssue A linked issue is missing for this Pull Request NeedsWebsiteDocsUpdate What it says labels Oct 25, 2024
@github-actions github-actions bot added this to the v22.0.0 milestone Oct 25, 2024
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codecov bot commented Oct 25, 2024

Codecov Report

Attention: Patch coverage is 0% with 8 lines in your changes missing coverage. Please review.

Project coverage is 67.17%. Comparing base (4e385ce) to head (8df9040).
Report is 3 commits behind head on main.

Files with missing lines Patch % Lines
go/vt/vttablet/onlineddl/executor.go 0.00% 8 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main   #17066      +/-   ##
==========================================
+ Coverage   67.16%   67.17%   +0.01%     
==========================================
  Files        1571     1571              
  Lines      252097   252250     +153     
==========================================
+ Hits       169318   169457     +139     
- Misses      82779    82793      +14     

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Signed-off-by: Matt Lord <mattalord@gmail.com>
@mattlord mattlord added Type: Enhancement Logical improvement (somewhere between a bug and feature) Component: VReplication Component: Query Serving Component: Schema Tracker Component: Online DDL Online DDL (vitess/native/gh-ost/pt-osc) and removed NeedsDescriptionUpdate The description is not clear or comprehensive enough, and needs work NeedsWebsiteDocsUpdate What it says NeedsIssue A linked issue is missing for this Pull Request NeedsBackportReason If backport labels have been applied to a PR, a justification is required labels Oct 25, 2024
@mattlord mattlord changed the title Improve Schema engine's TablesWithSize80 query Improve Schema Engine's TablesWithSize80 query Oct 25, 2024
@mattlord mattlord marked this pull request as ready for review October 25, 2024 03:16
Signed-off-by: Matt Lord <mattalord@gmail.com>
Signed-off-by: Matt Lord <mattalord@gmail.com>
Signed-off-by: Matt Lord <mattalord@gmail.com>
Signed-off-by: Matt Lord <mattalord@gmail.com>
@mattlord mattlord removed the request for review from systay October 25, 2024 05:16
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--- FAIL: TestDropViewDDL (62.05s)
    views_test.go:189: all views are not dropped within the time

Do the query changes here now work correctly with views? There's a failing end-to-end test now.

@shlomi-noach
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Yeah, the new query does not work for views. Looking into.

@shlomi-noach
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Good old CREATE_OPTIONS IS NULL for views, which is why the original query had <=>. OK, easy enough to fix.

Signed-off-by: Shlomi Noach <2607934+shlomi-noach@users.noreply.github.com>
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Support for views (NULL for TABLE_OPTIONS) in 0467caa

Comment on lines 416 to 417
//
// Note the following:
// - We use a single query to fetch both partitioned and non-partitioned tables. This is because
// accessing `information_schema.innodb_tablespaces` is expensive on servers with many tablespaces,
// and every query that loads the table needs to perform full table scans on it. Doing a single
// table scan is more efficient than doing more than one.
// - We utilize `INFORMATION_SCHEMA`.`TABLES`.`CREATE_OPTIONS` column to do early pruning before the JOIN.
// - `TABLES`.`TABLE_NAME` has `utf8mb4_0900_ai_ci` collation. `INNODB_TABLESPACES`.`NAME` has `utf8mb3_general_ci`.
// We normalize the collation to get better query performance (we force the casting at the time of our choosing)
const TablesWithSize80 = `SELECT t.table_name,
t.table_type,
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these comments were helpful.
Can you add the comments with new changes to know why it is done this way.

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Added useful comments :)

@shlomi-noach
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@arthurschreiber the current change goes back to two SELECT queries combined with UNION ALL. In #15713 you had reservations about using two queries, but right now this looks to be the most optimal solution that is also correct. Would you care to try the revised query in your environment to see how it performs?

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@arthurschreiber
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I'm taking a look right now.

@arthurschreiber
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So I took a look at #15713, and I'm not even sure the change in that PR was good.

Testing on my system, the original query takes 0.4 seconds, and the query proposed in #15713 takes 17 seconds (!).

The new query here brings query execution time down to 0.4 seconds.

One improvement I could find was to change the innodb_tablespaces join slightly:

SELECT t.table_name,
    t.table_type,
    UNIX_TIMESTAMP(t.create_time),
    t.table_comment,
    SUM(i.file_size),
    SUM(i.allocated_size)
  FROM information_schema.tables t
  LEFT JOIN (SELECT name, file_size, allocated_size FROM information_schema.innodb_tablespaces WHERE name LIKE CONCAT(database(), '/%')) i
  ON i.name = CONCAT(t.table_schema, '/', t.table_name) COLLATE utf8mb3_general_ci
  WHERE
    t.table_schema = database() AND IFNULL(t.create_options, '') NOT LIKE '%partitioned%'
  GROUP BY
    t.table_schema, t.table_name, t.table_type, t.create_time, t.table_comment
UNION ALL
SELECT t.table_name,
    t.table_type,
    UNIX_TIMESTAMP(t.create_time),
    t.table_comment,
    SUM(i.file_size),
    SUM(i.allocated_size)
  FROM information_schema.tables t
  LEFT JOIN (SELECT name, file_size, allocated_size FROM information_schema.innodb_tablespaces WHERE name LIKE CONCAT(database(), '/%')) i
    ON i.name LIKE (CONCAT(t.table_schema, '/', t.table_name, '#p#%') COLLATE utf8mb3_general_ci)
  WHERE
    t.table_schema = database() AND t.create_options LIKE '%partitioned%'
  GROUP BY
    t.table_schema, t.table_name, t.table_type, t.create_time, t.table_comment

That brings the query down to 0.37 seconds.

I tried multiple things to merge the two queries to reduce the accesses to information_schema.innodb_tablespaces down to 1, but they all performed worse than this.

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@arthurschreiber thank you for taking a look!

Yeah, I, too, tried the LEFT JOIN (SELECT name, file_size, allocated_size FROM information_schema.innodb_tablespaces WHERE name LIKE CONCAT(database(), '/%')) i variation locally and could not reliably identify a change either way. There is the potential for MySQL to create an indexed temporary table either with or without this change. I think the difference between the two variations is small enough that it is not worth the added complexity, but I won't die on this hill.

Glad to hear the query in this PR works well for you!

@arthurschreiber
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@shlomi-noach I see a consistent 10% improvement, so it would be nice to have that change. In our testing system, we start a lot of keyspaces in a single vtcombo instance, and I remember this query being one of the places where we end up spending quite a bit of time in.

@arthurschreiber
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arthurschreiber commented Oct 28, 2024

Either way, this is a big improvement compared to before! ❤️

Signed-off-by: Shlomi Noach <2607934+shlomi-noach@users.noreply.github.com>
Signed-off-by: Shlomi Noach <2607934+shlomi-noach@users.noreply.github.com>
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@arthurschreiber the query now uses the subselect clause.

@shlomi-noach shlomi-noach merged commit 4550640 into vitessio:main Oct 28, 2024
98 checks passed
@shlomi-noach shlomi-noach deleted the 1000s_tables_perf branch October 28, 2024 15:07
deepthi pushed a commit that referenced this pull request Oct 31, 2024
#17088)

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deepthi pushed a commit that referenced this pull request Oct 31, 2024
#17089)

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deepthi pushed a commit that referenced this pull request Oct 31, 2024
#17090)

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#17091)

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* [release-19.0] Fix the install dependencies script in Docker (vitessio#16340) (vitessio#16346)

Signed-off-by: Florent Poinsard <florent.poinsard@outlook.fr>
Co-authored-by: vitess-bot[bot] <108069721+vitess-bot[bot]@users.noreply.github.com>

* [release-19.0] planner: Handle ORDER BY inside derived tables (vitessio#16353) (vitessio#16359)

Signed-off-by: Andres Taylor <andres@planetscale.com>
Co-authored-by: Andres Taylor <andres@planetscale.com>

* [release-19.0] Fix Join Predicate Cleanup Bug in Route Merging (vitessio#16386) (vitessio#16389)

Signed-off-by: Andres Taylor <andres@planetscale.com>
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* [release-19.0] fix issue with aggregation inside of derived tables (vitessio#16366) (vitessio#16384)

Signed-off-by: Andres Taylor <andres@planetscale.com>
Co-authored-by: Andrés Taylor <andres@planetscale.com>

* [release-19.0] Use default schema reload config values when config file is empty (vitessio#16393) (vitessio#16410)

Signed-off-by: Matt Lord <mattalord@gmail.com>
Co-authored-by: vitess-bot[bot] <108069721+vitess-bot[bot]@users.noreply.github.com>

* [release-19.0] Fix subquery planning having an aggregation that is used in order by as long as we can merge it all into a single route (vitessio#16402) (vitessio#16407)

Signed-off-by: Manan Gupta <manan@planetscale.com>
Co-authored-by: vitess-bot[bot] <108069721+vitess-bot[bot]@users.noreply.github.com>

* [release-19.0] Fix panic in schema tracker in presence of keyspace routing rules (vitessio#16383) (vitessio#16406)

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* [release-19] Vitess tester workflow (vitessio#16127) (vitessio#16418)

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* [release-19.0] feat: add a LIMIT 1 on EXISTS subqueries to limit network overhead (vitessio#16153) (vitessio#16191)

Signed-off-by: Andres Taylor <andres@planetscale.com>
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* [release-19.0] Code Freeze for `v19.0.5` (vitessio#16448)

Signed-off-by: Andres Taylor <andres@planetscale.com>

* [release-19.0] Release of `v19.0.5` (vitessio#16450)

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* [release-19.0] Bump to `v19.0.6-SNAPSHOT` after the `v19.0.5` release (vitessio#16456)

Signed-off-by: Andres Taylor <andres@planetscale.com>

* [release-19.0] fix: reference table join merge (vitessio#16488) (vitessio#16496)

Signed-off-by: Harshit Gangal <harshit@planetscale.com>
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* [release-19.0] Improve the queries upgrade/downgrade CI workflow by using same test code version as binary (vitessio#16494) (vitessio#16501)

Signed-off-by: Florent Poinsard <florent.poinsard@outlook.fr>
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* [release-19.0] bugfix: don't treat join predicates as filter predicates (vitessio#16472) (vitessio#16474)

Signed-off-by: Andres Taylor <andres@planetscale.com>
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* [release-19.0] VTAdmin: Upgrade websockets js package (vitessio#16504) (vitessio#16512)

Signed-off-by: Matt Lord <mattalord@gmail.com>
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* [release-19.0] bugfix: Allow cross-keyspace joins (vitessio#16520) (vitessio#16523)

Signed-off-by: Andres Taylor <andres@planetscale.com>
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* [release-19.0] simplify merging logic (vitessio#16525) (vitessio#16532)

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Co-authored-by: vitess-bot[bot] <108069721+vitess-bot[bot]@users.noreply.github.com>

* [release-19.0] Fix: Offset planning in hash joins (vitessio#16540) (vitessio#16551)

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* [release-19.0] Fix `RemoveTablet` during `TabletExternallyReparented` causing connection issues (vitessio#16371) (vitessio#16567)

Signed-off-by: Arthur Schreiber <arthurschreiber@github.com>
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* v19 backport: Throttler/vreplication: fix app name used by VPlayer (vitessio#16578) (vitessio#16580)

Signed-off-by: Shlomi Noach <2607934+shlomi-noach@users.noreply.github.com>

* [release-19.0] Upgrade the Golang version to `go1.22.6` (vitessio#16543)

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* v19 backport: Online DDL: avoid SQL's `CONVERT(...)`, convert programmatically if needed (vitessio#16603)

Signed-off-by: Shlomi Noach <2607934+shlomi-noach@users.noreply.github.com>

* [release-19.0] Remove mysql57/percona57 bootstrap images (vitessio#16620) (vitessio#16622)

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* [release-19.0] Fix query plan cache misses metric (vitessio#16562) (vitessio#16627)

Signed-off-by: shanth96 <shanth.sathiyaseelan@shopify.com>
Co-authored-by: vitess-bot[bot] <108069721+vitess-bot[bot]@users.noreply.github.com>

* [release-19.0] VReplication workflows: retry "wrong tablet type" errors (vitessio#16645) (vitessio#16652)

Signed-off-by: Rohit Nayak <rohit@planetscale.com>
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* [release-19.0] VStream API: validate that last PK has fields defined (vitessio#16478) (vitessio#16486)

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* [release-19.0] Update micromatch to 4.0.8 (vitessio#16660) (vitessio#16666)

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* [release-19.0] Replace ErrorContains checks with Error checks before running upgrade downgrade (vitessio#16700)

Signed-off-by: Manan Gupta <manan@planetscale.com>

* [release-19.0] JSON Encoding: Use Type_RAW for marshalling json (vitessio#16637) (vitessio#16681)

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* [release-19.0] FindErrantGTIDs: superset is not an errant GTID situation (vitessio#16725) (vitessio#16728)

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* [release-19.0] Move from 4-cores larger runners to `ubuntu-latest` (vitessio#16714) (vitessio#16717)

Signed-off-by: Florent Poinsard <florent.poinsard@outlook.fr>
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* [release-19.0] Upgrade the Golang version to `go1.22.7` (vitessio#16721)

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* [release-19.0] Code Freeze for `v19.0.6` (vitessio#16745)

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* [release-19.0] Release of `v19.0.6` (vitessio#16747)

Signed-off-by: Rohit Nayak <rohit@planetscale.com>

* [release-19.0] Bump to `v19.0.7-SNAPSHOT` after the `v19.0.6` release (vitessio#16753)

Signed-off-by: Rohit Nayak <rohit@planetscale.com>

* [release-19.0] Remove mysql57 from docker images (vitessio#16763)

Signed-off-by: Florent Poinsard <florent.poinsard@outlook.fr>

* [release-19.0] VTAdmin: Address security vuln in path-to-regexp node pkg (vitessio#16770) (vitessio#16772)

Signed-off-by: Matt Lord <mattalord@gmail.com>
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* Backport: Fix ACL checks for CTEs (vitessio#16642) (vitessio#16776)

Signed-off-by: Manan Gupta <manan@planetscale.com>
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* [release-19.0] VTAdmin: Fix serve-handler's path-to-regexp dep and add default schema refresh (vitessio#16778) (vitessio#16783)

Signed-off-by: Matt Lord <mattalord@gmail.com>
Co-authored-by: vitess-bot[bot] <108069721+vitess-bot[bot]@users.noreply.github.com>
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* [release-19.0] Bump com.google.protobuf:protobuf-java from 3.24.3 to 3.25.5 in /java (vitessio#16809) (vitessio#16837)

Signed-off-by: dependabot[bot] <support@github.com>
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* [release-19.0] VTAdmin: Upgrade deps to address security vulns (vitessio#16843) (vitessio#16846)

Signed-off-by: Matt Lord <mattalord@gmail.com>
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* [release-19.0] Support passing filters to `discovery.NewHealthCheck(...)` (vitessio#16170) (vitessio#16871)

Signed-off-by: Tim Vaillancourt <tim@timvaillancourt.com>

* [release-19.0] Fail fast when builtinbackup fails to restore a single file (vitessio#16856) (vitessio#16867)

Signed-off-by: Florent Poinsard <florent.poinsard@outlook.fr>
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* [release-19.0] Upgrade Golang to 1.22.8 (vitessio#16895)

Signed-off-by: Florent Poinsard <florent.poinsard@outlook.fr>

* [release-19.0] VTTablet: smartconnpool: notify all expired waiters (vitessio#16897) (vitessio#16901)

Signed-off-by: Brendan Dougherty <brendan.dougherty@shopify.com>
Co-authored-by: vitess-bot[bot] <108069721+vitess-bot[bot]@users.noreply.github.com>

* [release-19.0] Fix race in `replicationLagModule` of `go/vt/throttle` (vitessio#16078) (vitessio#16899)

Signed-off-by: Tim Vaillancourt <tim@timvaillancourt.com>
Co-authored-by: vitess-bot[bot] <108069721+vitess-bot[bot]@users.noreply.github.com>
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* [release-19.0] Bump commons-io:commons-io from 2.7 to 2.14.0 in /java (vitessio#16889) (vitessio#16930)

Signed-off-by: dependabot[bot] <support@github.com>
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* [release-19.0] fixes bugs around expression precedence and LIKE (vitessio#16934 & vitessio#16649) (vitessio#16945)

Signed-off-by: Andres Taylor <andres@planetscale.com>
Signed-off-by: Manan Gupta <manan@planetscale.com>
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* [release-19.0] Flaky test fixes (vitessio#16940) (vitessio#16958)

Signed-off-by: Manan Gupta <manan@planetscale.com>
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* [release-19.0] fix: route engine to handle column truncation for execute after lookup (vitessio#16981) (vitessio#16984)

Signed-off-by: Harshit Gangal <harshit@planetscale.com>
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* [release-19.0] bugfix: add HAVING columns inside derived tables (vitessio#16976) (vitessio#16978)

Signed-off-by: Andres Taylor <andres@planetscale.com>
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* [release-19.0] Fix deadlock between health check and topology watcher (vitessio#16995) (vitessio#17008)

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Co-authored-by: vitess-bot[bot] <108069721+vitess-bot[bot]@users.noreply.github.com>

* [release-19.0] Add support for `MultiEqual` opcode for lookup vindexes. (vitessio#16975) (vitessio#17039)

Signed-off-by: Arthur Schreiber <arthurschreiber@github.com>
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* [release-19.0] bugfix: treat EXPLAIN like SELECT (vitessio#17054) (vitessio#17056)

Signed-off-by: Andres Taylor <andres@planetscale.com>
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* [release-19.0] Delegate Column Availability Checks to MySQL for Single-Route Queries (vitessio#17077) (vitessio#17085)

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* Bugfix for Panic on Joined Queries with Non-Authoritative Tables in Vitess 19.0 (vitessio#17103)

Signed-off-by: Andres Taylor <andres@planetscale.com>

* [release-19.0] Improve Schema Engine's TablesWithSize80 query (vitessio#17066) (vitessio#17089)

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* [release-19.0] Fix unreachable errors when taking a backup (vitessio#17062) (vitessio#17110)

Signed-off-by: Florent Poinsard <florent.poinsard@outlook.fr>
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* [release-19.0] Code Freeze for `v19.0.7` (vitessio#17148)

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* [release-19.0] Release of `v19.0.7` (vitessio#17149)

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* restore test conditional for v18 vttablet

Signed-off-by: Tim Vaillancourt <tim@timvaillancourt.com>

* restore more test conditional for v18 binaries

Signed-off-by: Tim Vaillancourt <tim@timvaillancourt.com>

* restore whitespace

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* Revert "[release-19.0] Improve the queries upgrade/downgrade CI workflow by using same test code version as binary (vitessio#16494) (vitessio#16501)"

This reverts commit 25a80ac.

* add missing table from cleanup

Signed-off-by: Tim Vaillancourt <tim@timvaillancourt.com>

---------

Signed-off-by: Andres Taylor <andres@planetscale.com>
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Labels
Backport to: release-19.0 Needs to be back ported to release-19.0 Backport to: release-20.0 Needs to be backport to release-20.0 Backport to: release-21.0 Needs to be backport to release-21.0 Component: Online DDL Online DDL (vitess/native/gh-ost/pt-osc) Component: Query Serving Component: Schema Tracker Component: VReplication Type: Enhancement Logical improvement (somewhere between a bug and feature)
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Bug Report: OnlineDDL migrations fail when keyspace has thousands of tables
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