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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

1.0.0 (2023-12-20)

Added

  • some internal speedups for SingleTokenLooupAnnotator, MultiTokenLookupAnnotator and LookupTrie
  • caching for sorting annotations, which helps with speed
  • the pre_match_words attribute for RegexpAnnotator
  • the option to provide a LookupTrie to a MultiTokenAnnotator directly
  • a method for getting all words or, for looking up tokens with specific text values in a TokenList, with options for matching_pipeline
  • automated build/publish on merge to main

Changed

  • sorting Annotation and AnnotationSet now requires sort key to be provided as a tuple, and callbacks as a frozendict
  • renamed docdeid.tokenize to docdeid.tokenizer
  • renamed docdeid.process.doc to docdeid.process.doc_processor
  • renamed docdeid.process.annotation_set to docdeid.process.annotation_processor
  • Annotation and Token now only include int/str fields when serializing
  • formatting and linting settings
  • moved the logic for linking tokens to TokenList rather than Tokenizer
  • use casefold() instead of lower() for lowercasing

Fixed

  • a bug with overlapping annotations in MultiTokenLookupAnnotator

Removed

  • automated coverage reporting

0.1.10 (2023-11-28)

Added

  • RegexpAannotator accepts regexp strings in addition to compiled regexp patterns

Changed

  • consisent use of args and kwargs in Annotator class tree
  • RegexpAnnotator now offers function to validate matches, implementable by subclassing

0.1.9 (2023-10-20)

Changed

  • made the priority attribute of an Annotation non-Optional
  • multi token lookup now sets the start_token and end_token fields of an Annotation

Fixed

  • a bug with determnistic sort, when Optional fields were set

0.1.8 (2023-08-01)

Added

  • an additional priority attribute for Annotation, giving an extra option for sorting

0.1.7 (2023-07-26)

Changed

  • upgraded dependencies

0.1.6 (2023-03-28)

Changed

  • upgraded dependencies, including a markdown-it-py which had a vulnerability

0.1.5 (2023-02-15)

Changed

  • upgraded dependencies, including certifi which had a vulnerability

0.1.4 (2022-11-29)

Changed

  • renamed processors_enabled and processors_disabled to enabled and disabled, respectively

0.1.3 (2022-11-28)

Added

  • Include py.typed in packaging

0.1.2 (2022-11-28)

Added

  • a py.typed file, indicating PEP 561 compliance

Changed

  • minor type hint updates
  • minor doc updates

0.1.1 (2022-11-18)

Added

  • Support for disabling specific processors with the processors_disabled keyword.

0.1.0 (2022-11-18)

Added

  • Initial version