DESCRIPTION

Package: bactMAP
Title: Visualization and Analysis of Bacterial Cell Segmentation and Fluorescence Data
Version: 0.1.0.1
Authors@R: person("Renske", "van Raaphorst", email = "renske.vanraaphorst@unil.ch", role = c("aut", "cre"))
Description: Automated import of bacterial cell segmentation and fluorescence data from a range of softwares to uniformally analyze and visualize.
Depends: R (>= 3.4)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
URL: https://veeninglab.com/bactmap
biocViews:
Imports:
  ggplot2 (>= 3.0.0),
  rlang,
  plyr,
  utils,
  methods,
  stats,
  dplyr,
  tidyr
Suggests:
  ggtree,
  gridExtra,
  MASS,
  reshape2,
  R.matlab,
  shotGroups,
  sp,
  tiff,
  raster,
  stringr,
  BiocManager,
  igraph,
  grid,
  ape,
  rgeos,
  knitr,
  rmarkdown,
  pbapply,
  gganimate (>= 1.0.3),
  ggimage,
  mvtnorm,
  tidyverse
Collate: 'ouftidirectlyfrommatlab.R' 'extr_Ilastik.R' 'Extr_Morphometrics.R' 'ExtractCSVs.R' 'helperfunctions.R' 'ouftimeshtransform_fullfunction.R' 'plothelper.R' 'supersegger_genealogy.R' 'Plot_Image.R' 'objectplotting.R' 'supersegger_meshes.R' 'combine_analyses.R' 'timelapse.R' 'plotTracks.R' 'objectInBox.R' 'zzz.R'
RoxygenNote: 7.1.1
VignetteBuilder: knitr