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Cellformer #395

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8 tasks
laraPPr opened this issue Aug 23, 2024 · 4 comments · Fixed by easybuilders/easybuild-easyconfigs#21621
Closed
8 tasks

Cellformer #395

laraPPr opened this issue Aug 23, 2024 · 4 comments · Fixed by easybuilders/easybuild-easyconfigs#21621
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@PetrKralCZ
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difficulty: medium software that likely require a fair amount of effort to support new new software priority: ASAP Python site:ugent Software installation request for UGent Tier-2

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@laraPPr
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laraPPr commented Aug 23, 2024

  • link to support ticket: #2024082260001072
  • website: https://github.com/elo-nsrb/Cellformer
  • installation docs: https://github.com/elo-nsrb/Cellformer
  • toolchain: foss/2023a or older
  • easyblock to use: PythonPackage? PythonBundle?
  • required dependencies:
    • Python 3
    • PyTorch (2.0.0)
    • ArchR (R version 4.2.2)
    • Scikit-learn (1.2.2)
    • Asteroid (0.5.2)
    • Pytorch-lightning (2.0.4)
    • comet_ml (3.32.8)
  • optional dependencies:
    • ...
  • notes:
    • ...
  • effort: (TBD)
  • other install methods
    • conda: yes (link?) / no
    • container image: yes (link?) / no
    • pre-built binaries (RHEL8 Linux x86_64): yes (link?) / no
    • easyconfig outside EasyBuild: yes / no
@laraPPr laraPPr added difficulty: easy software that should be easy to support new new software priority: ASAP Python site:ugent Software installation request for UGent Tier-2 labels Aug 23, 2024
PetrKralCZ added a commit that referenced this issue Aug 23, 2024
@PetrKralCZ
progress on #395 Cellformer
a6e89c7
@PetrKralCZ PetrKralCZ self-assigned this Aug 23, 2024
@PetrKralCZ PetrKralCZ added difficulty: medium software that likely require a fair amount of effort to support and removed difficulty: easy software that should be easy to support labels Sep 11, 2024
PetrKralCZ added a commit that referenced this issue Sep 11, 2024
@PetrKralCZ
progress on #395 Cellformer
f2b4b8c
PetrKralCZ added a commit that referenced this issue Sep 24, 2024
@PetrKralCZ
progress on #395 Cellformer
7c7f4ef
PetrKralCZ added a commit that referenced this issue Sep 24, 2024
@PetrKralCZ
progress on #395 Cellformer
297e62b
@PetrKralCZ
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@PetrKralCZ
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PetrKralCZ added a commit that referenced this issue Oct 7, 2024
@PetrKralCZ
progress on #395 Cellformer
b6300bc
PetrKralCZ added a commit that referenced this issue Oct 11, 2024
@PetrKralCZ
progress on #395 Cellformer
97b5eed
@PetrKralCZ
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@PetrKralCZ PetrKralCZ mentioned this issue Oct 11, 2024
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PetrKralCZ added a commit that referenced this issue Oct 11, 2024
@PetrKralCZ
progress on #395 Cellformer
637fdee
PetrKralCZ added a commit that referenced this issue Oct 16, 2024
@PetrKralCZ
progress on #395 Cellformer
061a0c9
@boegel
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boegel commented Oct 17, 2024

@PetrKralCZ PR merged, ready for cleanup

@boegel boegel reopened this Oct 17, 2024
PetrKralCZ added a commit that referenced this issue Oct 17, 2024
@PetrKralCZ
cleanup for #395
6f70ac7
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difficulty: medium software that likely require a fair amount of effort to support new new software priority: ASAP Python site:ugent Software installation request for UGent Tier-2
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{bio}[foss/2023a] Cellformer v20240917 w/ R 4.3.2 PetrKralCZ/easybuild-easyconfigs
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@boegel @PetrKralCZ @laraPPr