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Issue #58 Don't print error when more data is requested from readGENEActiv() than is available in the file #59

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merged 2 commits into from
Feb 28, 2024
Merged

Issue #58 Don't print error when more data is requested from readGENEActiv() than is available in the file #59

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60a1ec4
fix error string formatting
l-k- Feb 8, 2024
b11ed0f
don't report error expected at end of file
l-k- Feb 8, 2024
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7 changes: 6 additions & 1 deletion src/GENEActivReader.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -195,7 +195,12 @@ Rcpp::List GENEActivReader(std::string filename, std::size_t start = 0, std::siz
i++;
} catch (const std::exception& ex) {
errCounter++;
Rcpp::Rcerr << "data error at i = %d: %s i: " << i << " " << ex.what() << "\n";
std::string err_text = ex.what();

// report any error other than the one expected at the end of file
if (err_text.find("stoll: no conversion") == std::string::npos) {
Rcpp::Rcerr << "data error at i = " << i << " : " << err_text << "\n";
}
break; // rest of this block could be corrupted
}
}
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