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DESCRIPTION
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Package: bugsigdbr
Version: 1.13.0
Title: R-side access to published microbial signatures from BugSigDB
Authors@R: c(
person(given = "Ludwig",
family = "Geistlinger",
role = c("aut", "cre"),
email = "ludwig.geistlinger@gmail.com"),
person(given = "Jennifer",
family = "Wokaty",
role = "aut",
email = "jennifer.wokaty@sph.cuny.edu"),
person(given = "Levi",
family = "Waldron",
role = "aut",
email = "lwaldron.research@gmail.com"))
Description:
The bugsigdbr package implements convenient access to bugsigdb.org
from within R/Bioconductor. The goal of the package is to facilitate import of
BugSigDB data into R/Bioconductor, provide utilities for extracting microbe
signatures, and enable export of the extracted signatures to plain text files
in standard file formats such as GMT.
URL: https://github.com/waldronlab/bugsigdbr
BugReports: https://github.com/waldronlab/bugsigdbr/issues
Depends: R (>= 4.1)
Imports:
BiocFileCache,
methods,
vroom,
utils
Suggests:
BiocStyle,
knitr,
ontologyIndex,
rmarkdown,
testthat (>= 3.0.0)
License: GPL-3
VignetteBuilder: knitr
biocViews: DataImport, GeneSetEnrichment, Metagenomics, Microbiome
Encoding: UTF-8
RoxygenNote: 7.3.2