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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(allSamples)
export(cBioCache)
export(cBioDataPack)
export(cBioPortal)
export(cBioPortalData)
export(clinicalData)
export(downloadStudy)
export(fetchData)
export(genePanelMolecular)
export(genePanels)
export(geneTable)
export(getDataByGenes)
export(getGenePanel)
export(getGenePanelMolecular)
export(getSampleInfo)
export(getStudies)
export(loadStudy)
export(molecularData)
export(molecularProfiles)
export(mutationData)
export(queryGeneTable)
export(removeDataCache)
export(removePackCache)
export(sampleLists)
export(samplesInSampleLists)
export(searchOps)
export(setCache)
export(untarStudy)
exportClasses(cBioPortal)
exportMethods(operations)
import(RTCGAToolbox)
importFrom(AnVIL,Service)
importFrom(AnVIL,operations)
importFrom(BiocBaseUtils,lifeCycle)
importFrom(BiocFileCache,BiocFileCache)
importFrom(BiocFileCache,bfcadd)
importFrom(BiocFileCache,bfccache)
importFrom(BiocFileCache,bfcdownload)
importFrom(BiocFileCache,bfcinfo)
importFrom(BiocFileCache,bfcnew)
importFrom(BiocFileCache,bfcquery)
importFrom(BiocFileCache,bfcremove)
importFrom(BiocFileCache,bfcrpath)
importFrom(BiocFileCache,bfcupdate)
importFrom(GenomeInfoDb,"genome<-")
importFrom(GenomeInfoDb,genome)
importFrom(GenomicRanges,makeGRangesListFromDataFrame)
importFrom(MultiAssayExperiment,ExperimentList)
importFrom(MultiAssayExperiment,MultiAssayExperiment)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,isSingleString)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,rowData)
importFrom(TCGAutils,TCGAbarcode)
importFrom(TCGAutils,findGRangesCols)
importFrom(TCGAutils,generateMap)
importFrom(methods,as)
importFrom(methods,callNextMethod)
importFrom(methods,is)
importFrom(methods,new)
importFrom(readr,read_tsv)
importFrom(readr,type_convert)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(utils,data)
importFrom(utils,download.file)
importFrom(utils,untar)