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Describe the bug
I am tring to get the count table of relative abundance of some disease related samples, all good when loading with counts = FALSE but errors occur when setting counts to TRUE.
To Reproduce
I have version curatedMetagenomicData_3.8.0
Additional context
Error message:
Error in validObject(.Object) :
invalid class “SummarizedExperiment” object:
nb of cols in 'assay' (0) must equal nb of rows in 'colData' (165)
The text was updated successfully, but these errors were encountered:
Guan06
changed the title
returnSamples() error when setting 'counts = TRUE' for 'relative_abundance' aataType
returnSamples() error when setting 'counts = TRUE' for 'relative_abundance' dataType
Sep 28, 2024
Describe the bug
I am tring to get the count table of relative abundance of some disease related samples, all good when loading with
counts = FALSE
but errors occur when settingcounts
toTRUE
.To Reproduce
I have version curatedMetagenomicData_3.8.0
Blow is the scripts that got errors:
Expected behavior
Return of a count table.
Additional context
Error message:
Error in validObject(.Object) :
invalid class “SummarizedExperiment” object:
nb of cols in 'assay' (0) must equal nb of rows in 'colData' (165)
The text was updated successfully, but these errors were encountered: