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BROCOLLI crashes without error #37

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chrisgorgo opened this issue Jun 10, 2017 · 0 comments
Open

BROCOLLI crashes without error #37

chrisgorgo opened this issue Jun 10, 2017 · 0 comments

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@chrisgorgo
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on ds000009 R2.0.1 - sub-29

docker run -ti -v D:\:/d bids/broccoli:v1.0.1 /d/data/ds000009_R2.0.1/ /d/scratch/broccoli participant --participant_label 29
Running the BIDS validator for the dataset
        1: Not all subjects/sessions/runs have the same scanning parameters. (code: 39 - INCONSISTENT_PARAMETERS)
                /sub-01/func/sub-01_task-balloonanalogrisktask_bold.nii.gz
                /sub-02/func/sub-02_task-balloonanalogrisktask_bold.nii.gz
                /sub-03/func/sub-03_task-balloonanalogrisktask_bold.nii.gz
                /sub-04/func/sub-04_task-balloonanalogrisktask_bold.nii.gz
                /sub-05/dwi/sub-05_dwi.nii.gz
                /sub-06/func/sub-06_task-balloonanalogrisktask_bold.nii.gz
                /sub-07/func/sub-07_task-balloonanalogrisktask_bold.nii.gz
                /sub-09/func/sub-09_task-balloonanalogrisktask_bold.nii.gz
                /sub-10/func/sub-10_task-balloonanalogrisktask_bold.nii.gz
                /sub-11/func/sub-11_task-balloonanalogrisktask_bold.nii.gz
                ... and 14 more files having this issue (Use --verbose to see them all).

        Summary:                 Available Tasks:                Available Modalities:
        855 Files, 6.07GB        discounting                     T1w
        24 - Subjects            balloon analog risk task        inplaneT2
        1 - Session              emotional regulation            dwi
                                 stop signal                     bold


Doing first level analysis


bids_dir is /d/data/ds000009_R2.0.1/, output_dir is /d/scratch/broccoli, analysis type is participant, participants are 29


Task names are

balloonanalogrisktask
discounting
emotionalregulation
stopsignal




Analyzing subject sub-29




Analyzing subject sub-29 task balloonanalogrisktask


Number of runs is 1

Creating '/d/scratch/broccoli/sub-29/balloonanalogrisktask/cond_run1_BALOON.txt'...

BROCOLLI exist with a non-zero exit code without producing the expected analysis outputs.

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