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mbe.bst
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mbe.bst
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%%
%% This is file `mbe.bst',
%% generated with the docstrip utility.
%%
%% (but hand-tweaked by Philip Johnson to match MBE style as of June
%% 2007). Slight correction in Dec 2012 to fix in-text citation to
%% use first author + et. al. for 3 or more authors (previously was
%% using 4 or more). Also made journal title emphasized.
%%
%% The original source files were:
%%
%% merlin.mbs (with options: `ay,nat,nm-rvx,ed-rev,jnrlst,nmlm,x10,x0,m3,keyxyr,dt-beg,yr-per,note-yr,jttl-rm,vnum-x,num-xser,jnm-x,btit-rm,bt-rm,add-pub,pre-pub,in-col,pp,xedn,xand,nfss,')
%% ----------------------------------------
%% *** Molecular Biology & Evolution ***
%%
%% Copyright 1994-2005 Patrick W Daly
% ===============================================================
% IMPORTANT NOTICE:
% This bibliographic style (bst) file has been generated from one or
% more master bibliographic style (mbs) files, listed above.
%
% This generated file can be redistributed and/or modified under the terms
% of the LaTeX Project Public License Distributed from CTAN
% archives in directory macros/latex/base/lppl.txt; either
% version 1 of the License, or any later version.
% ===============================================================
% Name and version information of the main mbs file:
% \ProvidesFile{merlin.mbs}[2005/10/17 4.14 (PWD, AO, DPC)]
% For use with BibTeX version 0.99a or later
%-------------------------------------------------------------------
% This bibliography style file is intended for texts in ENGLISH
% This is an author-year citation style bibliography. As such, it is
% non-standard LaTeX, and requires a special package file to function properly.
% Such a package is natbib.sty by Patrick W. Daly
% The form of the \bibitem entries is
% \bibitem[Jones et al.(1990)]{key}...
% \bibitem[Jones et al.(1990)Jones, Baker, and Smith]{key}...
% The essential feature is that the label (the part in brackets) consists
% of the author names, as they should appear in the citation, with the year
% in parentheses following. There must be no space before the opening
% parenthesis!
% With natbib v5.3, a full list of authors may also follow the year.
% In natbib.sty, it is possible to define the type of enclosures that is
% really wanted (brackets or parentheses), but in either case, there must
% be parentheses in the label.
% The \cite command functions as follows:
% \citet{key} ==>> Jones et al. (1990)
% \citet*{key} ==>> Jones, Baker, and Smith (1990)
% \citep{key} ==>> (Jones et al., 1990)
% \citep*{key} ==>> (Jones, Baker, and Smith, 1990)
% \citep[chap. 2]{key} ==>> (Jones et al., 1990, chap. 2)
% \citep[e.g.][]{key} ==>> (e.g. Jones et al., 1990)
% \citep[e.g.][p. 32]{key} ==>> (e.g. Jones et al., p. 32)
% \citeauthor{key} ==>> Jones et al.
% \citeauthor*{key} ==>> Jones, Baker, and Smith
% \citeyear{key} ==>> 1990
%---------------------------------------------------------------------
ENTRY
{ address
author
booktitle
chapter
edition
editor
eid
howpublished
institution
journal
key
month
note
number
organization
pages
publisher
school
series
title
type
volume
year
}
{}
{ label extra.label sort.label short.list }
INTEGERS { output.state before.all mid.sentence after.sentence after.block }
FUNCTION {init.state.consts}
{ #0 'before.all :=
#1 'mid.sentence :=
#2 'after.sentence :=
#3 'after.block :=
}
STRINGS { s t}
FUNCTION {output.nonnull}
{ 's :=
output.state mid.sentence =
{ ", " * write$ }
{ output.state after.block =
{ add.period$ write$
newline$
"\newblock " write$
}
{ output.state before.all =
'write$
{ add.period$ " " * write$ }
if$
}
if$
mid.sentence 'output.state :=
}
if$
s
}
FUNCTION {output}
{ duplicate$ empty$
'pop$
'output.nonnull
if$
}
FUNCTION {output.check}
{ 't :=
duplicate$ empty$
{ pop$ "empty " t * " in " * cite$ * warning$ }
'output.nonnull
if$
}
FUNCTION {fin.entry}
{ add.period$
write$
newline$
}
FUNCTION {new.block}
{ output.state before.all =
'skip$
{ after.block 'output.state := }
if$
}
FUNCTION {new.sentence}
{ output.state after.block =
'skip$
{ output.state before.all =
'skip$
{ after.sentence 'output.state := }
if$
}
if$
}
FUNCTION {add.blank}
{ " " * before.all 'output.state :=
}
FUNCTION {date.block}
{
new.block
}
FUNCTION {not}
{ { #0 }
{ #1 }
if$
}
FUNCTION {and}
{ 'skip$
{ pop$ #0 }
if$
}
FUNCTION {or}
{ { pop$ #1 }
'skip$
if$
}
STRINGS {z}
FUNCTION {remove.dots}
{ 'z :=
""
{ z empty$ not }
{ z #1 #1 substring$
z #2 global.max$ substring$ 'z :=
duplicate$ "." = 'pop$
{ * }
if$
}
while$
}
FUNCTION {new.block.checkb}
{ empty$
swap$ empty$
and
'skip$
'new.block
if$
}
FUNCTION {field.or.null}
{ duplicate$ empty$
{ pop$ "" }
'skip$
if$
}
FUNCTION {emphasize}
{ duplicate$ empty$
{ pop$ "" }
{ "\emph{" swap$ * "}" * }
if$
}
FUNCTION {tie.or.space.prefix}
{ duplicate$ text.length$ #3 <
{ "~" }
{ " " }
if$
swap$
}
FUNCTION {capitalize}
{ "u" change.case$ "t" change.case$ }
FUNCTION {space.word}
{ " " swap$ * " " * }
% Here are the language-specific definitions for explicit words.
% Each function has a name bbl.xxx where xxx is the English word.
% The language selected here is ENGLISH
FUNCTION {bbl.and}
{ "and"}
FUNCTION {bbl.etal}
{ "et~al." }
FUNCTION {bbl.editors}
{ "editors" }
FUNCTION {bbl.editor}
{ "editor" }
FUNCTION {bbl.edby}
{ "edited by" }
FUNCTION {bbl.edition}
{ "edition" }
FUNCTION {bbl.volume}
{ "volume" }
FUNCTION {bbl.of}
{ "of" }
FUNCTION {bbl.number}
{ "number" }
FUNCTION {bbl.nr}
{ "no." }
FUNCTION {bbl.in}
{ "in" }
FUNCTION {bbl.pages}
{ "pp." }
FUNCTION {bbl.page}
{ "p." }
FUNCTION {bbl.chapter}
{ "chapter" }
FUNCTION {bbl.techrep}
{ "Technical Report" }
FUNCTION {bbl.mthesis}
{ "Master's thesis" }
FUNCTION {bbl.phdthesis}
{ "Ph.D. thesis" }
MACRO {jan} {"January"}
MACRO {feb} {"February"}
MACRO {mar} {"March"}
MACRO {apr} {"April"}
MACRO {may} {"May"}
MACRO {jun} {"June"}
MACRO {jul} {"July"}
MACRO {aug} {"August"}
MACRO {sep} {"September"}
MACRO {oct} {"October"}
MACRO {nov} {"November"}
MACRO {dec} {"December"}
MACRO {acmcs} {"ACM Computing Surveys"}
MACRO {acta} {"Acta Informatica"}
MACRO {cacm} {"Communications of the ACM"}
MACRO {ibmjrd} {"IBM Journal of Research and Development"}
MACRO {ibmsj} {"IBM Systems Journal"}
MACRO {ieeese} {"IEEE Transactions on Software Engineering"}
MACRO {ieeetc} {"IEEE Transactions on Computers"}
MACRO {ieeetcad}
{"IEEE Transactions on Computer-Aided Design of Integrated Circuits"}
MACRO {ipl} {"Information Processing Letters"}
MACRO {jacm} {"Journal of the ACM"}
MACRO {jcss} {"Journal of Computer and System Sciences"}
MACRO {scp} {"Science of Computer Programming"}
MACRO {sicomp} {"SIAM Journal on Computing"}
MACRO {tocs} {"ACM Transactions on Computer Systems"}
MACRO {tods} {"ACM Transactions on Database Systems"}
MACRO {tog} {"ACM Transactions on Graphics"}
MACRO {toms} {"ACM Transactions on Mathematical Software"}
MACRO {toois} {"ACM Transactions on Office Information Systems"}
MACRO {toplas} {"ACM Transactions on Programming Languages and Systems"}
MACRO {tcs} {"Theoretical Computer Science"}
FUNCTION {bibinfo.check}
{ swap$
duplicate$ missing$
{
pop$ pop$
""
}
{ duplicate$ empty$
{
swap$ pop$
}
{ swap$
pop$
}
if$
}
if$
}
FUNCTION {bibinfo.warn}
{ swap$
duplicate$ missing$
{
swap$ "missing " swap$ * " in " * cite$ * warning$ pop$
""
}
{ duplicate$ empty$
{
swap$ "empty " swap$ * " in " * cite$ * warning$
}
{ swap$
pop$
}
if$
}
if$
}
STRINGS { bibinfo}
INTEGERS { nameptr namesleft numnames }
FUNCTION {format.names}
{ 'bibinfo :=
duplicate$ empty$ 'skip$ {
's :=
"" 't :=
#1 'nameptr :=
s num.names$ 'numnames :=
numnames 'namesleft :=
{ namesleft #0 > }
{ s nameptr
"{vv~}{ll}{ f{}}{ jj}"
format.name$
remove.dots
bibinfo bibinfo.check
't :=
nameptr #1 >
{
nameptr #3
#1 + =
numnames #0
#10 +
> and
{ "others" 't :=
#1 'namesleft := }
'skip$
if$
namesleft #1 >
{ ", " * t * }
{
s nameptr "{ll}" format.name$ duplicate$ "others" =
{ 't := }
{ pop$ }
if$
"," *
t "others" =
{
" " * bbl.etal * " (" * numnames int.to.str$ * " co-authors)" *
}
{ " " * t * }
if$
}
if$
}
't
if$
nameptr #1 + 'nameptr :=
namesleft #1 - 'namesleft :=
}
while$
} if$
}
FUNCTION {format.names.ed}
{
format.names
}
FUNCTION {format.key}
{ empty$
{ key field.or.null }
{ "" }
if$
}
FUNCTION {format.authors}
{ author "author" format.names
}
FUNCTION {get.bbl.editor}
{ editor num.names$ #1 > 'bbl.editors 'bbl.editor if$ }
FUNCTION {format.editors}
{ editor "editor" format.names duplicate$ empty$ 'skip$
{
"," *
" " *
get.bbl.editor
*
}
if$
}
FUNCTION {format.note}
{
note empty$
{ "" }
{ note #1 #1 substring$
duplicate$ "{" =
'skip$
{ output.state mid.sentence =
{ "l" }
{ "u" }
if$
change.case$
}
if$
note #2 global.max$ substring$ * "note" bibinfo.check
}
if$
}
FUNCTION {format.title}
{ title
duplicate$ empty$ 'skip$
{ "t" change.case$ }
if$
"title" bibinfo.check
}
FUNCTION {format.full.names}
{'s :=
"" 't :=
#1 'nameptr :=
s num.names$ 'numnames :=
numnames 'namesleft :=
{ namesleft #0 > }
{ s nameptr
"{vv~}{ll}" format.name$
't :=
nameptr #1 >
{
nameptr #3
#1 + =
numnames #0
#10 +
> and
{ "others" 't :=
#1 'namesleft := }
'skip$
if$
namesleft #1 >
{ ", " * t * }
{
s nameptr "{ll}" format.name$ duplicate$ "others" =
{ 't := }
{ pop$ }
if$
t "others" =
{
" " * bbl.etal *
}
{
numnames #2 >
{ "," * }
'skip$
if$
bbl.and
space.word * t *
}
if$
}
if$
}
't
if$
nameptr #1 + 'nameptr :=
namesleft #1 - 'namesleft :=
}
while$
}
FUNCTION {author.editor.key.full}
{ author empty$
{ editor empty$
{ key empty$
{ cite$ #1 #3 substring$ }
'key
if$
}
{ editor format.full.names }
if$
}
{ author format.full.names }
if$
}
FUNCTION {author.key.full}
{ author empty$
{ key empty$
{ cite$ #1 #3 substring$ }
'key
if$
}
{ author format.full.names }
if$
}
FUNCTION {editor.key.full}
{ editor empty$
{ key empty$
{ cite$ #1 #3 substring$ }
'key
if$
}
{ editor format.full.names }
if$
}
FUNCTION {make.full.names}
{ type$ "book" =
type$ "inbook" =
or
'author.editor.key.full
{ type$ "proceedings" =
'editor.key.full
'author.key.full
if$
}
if$
}
FUNCTION {output.bibitem}
{ newline$
"\bibitem[{" write$
label write$
")" make.full.names duplicate$ short.list =
{ pop$ }
{ * }
if$
"}]{" * write$
cite$ write$
"}" write$
newline$
""
before.all 'output.state :=
}
FUNCTION {n.dashify}
{
't :=
""
{ t empty$ not }
{ t #1 #1 substring$ "-" =
{ t #1 #2 substring$ "--" = not
{ "--" *
t #2 global.max$ substring$ 't :=
}
{ { t #1 #1 substring$ "-" = }
{ "-" *
t #2 global.max$ substring$ 't :=
}
while$
}
if$
}
{ t #1 #1 substring$ *
t #2 global.max$ substring$ 't :=
}
if$
}
while$
}
FUNCTION {word.in}
{ bbl.in capitalize
":" *
" " * }
FUNCTION {format.date}
{ year "year" bibinfo.check duplicate$ empty$
{
"empty year in " cite$ * "; set to ????" * warning$
pop$ "????"
}
'skip$
if$
extra.label *
before.all 'output.state :=
after.sentence 'output.state :=
}
FUNCTION {format.btitle}
{ title "title" bibinfo.check
duplicate$ empty$ 'skip$
{
}
if$
}
FUNCTION {either.or.check}
{ empty$
'pop$
{ "can't use both " swap$ * " fields in " * cite$ * warning$ }
if$
}
FUNCTION {format.bvolume}
{ volume empty$
{ "" }
{ bbl.volume volume tie.or.space.prefix
"volume" bibinfo.check * *
series "series" bibinfo.check
duplicate$ empty$ 'pop$
{ swap$ bbl.of space.word * swap$
emphasize * }
if$
"volume and number" number either.or.check
}
if$
}
FUNCTION {format.number.series}
{ volume empty$
{ number empty$
{ series field.or.null }
{ series empty$
{ number "number" bibinfo.check }
{ output.state mid.sentence =
{ bbl.number }
{ bbl.number capitalize }
if$
number tie.or.space.prefix "number" bibinfo.check * *
bbl.in space.word *
series "series" bibinfo.check *
}
if$
}
if$
}
{ "" }
if$
}
FUNCTION {format.edition}
{ edition duplicate$ empty$ 'skip$
{
output.state mid.sentence =
{ "l" }
{ "t" }
if$ change.case$
"edition" bibinfo.check
" " * bbl.edition *
}
if$
}
INTEGERS { multiresult }
FUNCTION {multi.page.check}
{ 't :=
#0 'multiresult :=
{ multiresult not
t empty$ not
and
}
{ t #1 #1 substring$
duplicate$ "-" =
swap$ duplicate$ "," =
swap$ "+" =
or or
{ #1 'multiresult := }
{ t #2 global.max$ substring$ 't := }
if$
}
while$
multiresult
}
FUNCTION {format.pages}
{ pages duplicate$ empty$ 'skip$
{ duplicate$ multi.page.check
{
bbl.pages swap$
n.dashify
}
{
bbl.page swap$
}
if$
tie.or.space.prefix
"pages" bibinfo.check
* *
}
if$
}
FUNCTION {format.journal.pages}
{ pages duplicate$ empty$ 'pop$
{ swap$ duplicate$ empty$
{ pop$ pop$ format.pages }
{
":" *
swap$
n.dashify
"pages" bibinfo.check
*
}
if$
}
if$
}
FUNCTION {format.journal.eid}
{ eid "eid" bibinfo.check
duplicate$ empty$ 'pop$
{ swap$ duplicate$ empty$ 'skip$
{
":" *
}
if$
swap$ *
}
if$
}
FUNCTION {format.vol.num.pages}
{ volume field.or.null
duplicate$ empty$ 'skip$
{
"volume" bibinfo.check
}
if$
eid empty$
{ format.journal.pages }
{ format.journal.eid }
if$
}
FUNCTION {format.chapter.pages}
{ chapter empty$
'format.pages
{ type empty$
{ bbl.chapter }
{ type "l" change.case$
"type" bibinfo.check
}
if$
chapter tie.or.space.prefix
"chapter" bibinfo.check
* *
pages empty$
'skip$
{ ", " * format.pages * }
if$
}
if$
}
FUNCTION {format.booktitle}
{
booktitle "booktitle" bibinfo.check
}
FUNCTION {format.in.ed.booktitle}
{ format.booktitle duplicate$ empty$ 'skip$
{
editor "editor" format.names.ed duplicate$ empty$ 'pop$
{
"," *
" " *
get.bbl.editor
", " *
* swap$
* }
if$
word.in swap$ *
}
if$
}
FUNCTION {format.thesis.type}
{ type duplicate$ empty$
'pop$
{ swap$ pop$
"t" change.case$ "type" bibinfo.check
}
if$
}
FUNCTION {format.tr.number}
{ number "number" bibinfo.check
type duplicate$ empty$
{ pop$ bbl.techrep }
'skip$
if$
"type" bibinfo.check
swap$ duplicate$ empty$
{ pop$ "t" change.case$ }
{ tie.or.space.prefix * * }
if$
}
FUNCTION {format.article.crossref}
{
word.in
" \cite{" * crossref * "}" *
}
FUNCTION {format.book.crossref}
{ volume duplicate$ empty$
{ "empty volume in " cite$ * "'s crossref of " * crossref * warning$
pop$ word.in
}
{ bbl.volume
capitalize
swap$ tie.or.space.prefix "volume" bibinfo.check * * bbl.of space.word *
}
if$
" \cite{" * crossref * "}" *
}
FUNCTION {format.incoll.inproc.crossref}
{
word.in
" \cite{" * crossref * "}" *
}
FUNCTION {format.org.or.pub}
{ 't :=
""
address empty$ t empty$ and
'skip$
{
address "address" bibinfo.check *
t empty$
'skip$
{ address empty$
'skip$
{ ": " * }
if$
t *
}
if$
}
if$
}
FUNCTION {format.publisher.address}
{ publisher "publisher" bibinfo.warn format.org.or.pub
}
FUNCTION {format.organization.address}
{ organization "organization" bibinfo.check format.org.or.pub
}
FUNCTION {article}
{ output.bibitem
format.authors "author" output.check
author format.key output
format.date "year" output.check
date.block
format.title "title" output.check
new.block
crossref missing$
{
journal
"journal" bibinfo.check
"journal" output.check
"\emph{" swap$ "}" * *
add.period$
add.blank
format.vol.num.pages output
}
{ format.article.crossref output.nonnull
format.pages output
}
if$
new.block
format.note output
fin.entry
}
FUNCTION {book}
{ output.bibitem
author empty$
{ format.editors "author and editor" output.check
editor format.key output
}
{ format.authors output.nonnull
crossref missing$
{ "author and editor" editor either.or.check }
'skip$
if$
}
if$
format.date "year" output.check
date.block
format.btitle "title" output.check
crossref missing$
{ format.bvolume output
new.block
format.number.series output
new.sentence
format.publisher.address output
}
{
new.block
format.book.crossref output.nonnull
}
if$
format.edition output
new.block
format.note output
fin.entry
}
FUNCTION {booklet}
{ output.bibitem
format.authors output
author format.key output
format.date "year" output.check
date.block
format.title "title" output.check
new.block
howpublished "howpublished" bibinfo.check output
address "address" bibinfo.check output
new.block
format.note output
fin.entry
}
FUNCTION {inbook}
{ output.bibitem
author empty$
{ format.editors "author and editor" output.check
editor format.key output
}
{ format.authors output.nonnull
crossref missing$
{ "author and editor" editor either.or.check }
'skip$
if$
}
if$
format.date "year" output.check
date.block
format.btitle "title" output.check
crossref missing$
{
format.publisher.address output
format.bvolume output
format.chapter.pages "chapter and pages" output.check
new.block
format.number.series output
new.sentence
}
{
format.chapter.pages "chapter and pages" output.check
new.block
format.book.crossref output.nonnull
}
if$
format.edition output
new.block
format.note output
fin.entry
}
FUNCTION {incollection}
{ output.bibitem