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FragPipe/DIA-Umpire #63

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wenbostar opened this issue Nov 16, 2023 · 2 comments
Closed

FragPipe/DIA-Umpire #63

wenbostar opened this issue Nov 16, 2023 · 2 comments
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bug MSFragger/FragPipe/Philosopher

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@wenbostar
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When I loaded the psm.tsv and mzML files generated from FragPipe/DIA-Umpire into PDV, I got the following error:

java.lang.NullPointerException
	at PDVGUI.fileimport.FragePipeImport.getSpectrum(FragePipeImport.java:766)
	at PDVGUI.fileimport.FragePipeImport.parseResultMzML(FragePipeImport.java:316)
	at PDVGUI.fileimport.FragePipeImport.access$000(FragePipeImport.java:42)
	at PDVGUI.fileimport.FragePipeImport$1.run(FragePipeImport.java:159)
@KaiLiCn
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KaiLiCn commented Nov 16, 2023

Hi Bo,

Did you try to open the result directly inside the FragPipe? Can you share your psm.tsv and mzML file with me?

Kai

@wenbostar
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This is fixed in v1.8.2.

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@wenbostar @KaiLiCn