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run.sh
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run.sh
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#!/bin/bash
if [ -z "$1" ]
then
REGION=study_region
elif [ $1 = "test" ]
then
REGION=test_region
else
>&2 echo "Invalid parameter: $1"
exit 1
fi
# fail fast when permissions are not right
if [ ! -w /data ]
then
>&2 echo "Directory is not writable: /data"
>&2 echo "See its permissions:"
>&2 ls -la /data
exit 1
fi
GRASSDATA=/data/grassdata/nc_location/PERMANENT
# create GRASS GIS location
grass -c EPSG:6543 /data/grassdata/nc_location -e
#grass $GRASSDATA --exec g.region -p
# uncompress the point cloud
cd /data
7zr e -y /code/points.las.7z
mkdir $GRASSDATA/windows
cp /code/study_region $GRASSDATA/windows/
cp /code/test_region $GRASSDATA/windows/
grass $GRASSDATA --exec g.region region=$REGION
grass $GRASSDATA --exec /code/import_zones.sh /code/zones.txt
grass $GRASSDATA --exec \
r.unpack input=/code/ortho.grpack output=ortho
# fine resolution for the surfaces
grass $GRASSDATA --exec g.region res=1 -a
grass $GRASSDATA --exec /code/ground.sh
grass $GRASSDATA --exec /code/contours.sh
grass $GRASSDATA --exec /code/veg_surface.sh
# we changed the region, change it back
# 2D and 3D resolution same, same in all directions, and coarser
grass $GRASSDATA --exec g.region region=$REGION
grass $GRASSDATA --exec /code/density.sh
grass $GRASSDATA --exec /code/lidar3d.sh
grass $GRASSDATA --exec /code/ff.py
grass $GRASSDATA --exec /code/category_counts.sh
grass $GRASSDATA --exec /code/slice.sh
grass $GRASSDATA --exec /code/count_series.sh
grass $GRASSDATA --exec /code/zonal.sh
grass $GRASSDATA --exec /code/ffiness.sh
grass $GRASSDATA --exec /code/ffiness_zonal.sh
grass $GRASSDATA --exec /code/profiles.sh
mkdir /data/images
cd /data/images
cp /code/main_cat_3d.png /data/images
grass $GRASSDATA --exec /code/images.sh
grass $GRASSDATA --exec /code/plot_zonal.sh
grass $GRASSDATA --exec /code/ffiness_images.sh
grass $GRASSDATA --exec /code/comparison_images.sh
grass $GRASSDATA --exec /code/profile_images.sh
grass $GRASSDATA --exec /code/count_cats_figure.sh
#grass $GRASSDATA --exec g.list rast,rast3,vect