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souporcell_env.yaml
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souporcell_env.yaml
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name: souporcell
channels:
- r
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- backcall=0.1.0=py_0
- bcftools=1.9=ha228f0b_4
- bzip2=1.0.8=h516909a_0
- ca-certificates=2019.11.28=hecc5488_0
- certifi=2019.11.28=py36_0
- curl=7.65.3=hf8cf82a_0
- decorator=4.4.1=py_0
- htslib=1.9=ha228f0b_7
- jedi=0.15.1=py36_0
- krb5=1.16.3=h05b26f9_1001
- libcurl=7.65.3=hda55be3_0
- libdeflate=1.0=h14c3975_1
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- libgcc-ng=9.1.0=hdf63c60_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.1.0=hdf63c60_0
- ncurses=6.1=hf484d3e_1002
- openssl=1.1.1d=h516909a_0
- parso=0.5.1=py_0
- pexpect=4.7.0=py36_0
- pickleshare=0.7.5=py36_1000
- pip=19.2=py36_0
- prompt_toolkit=2.0.10=py_0
- ptyprocess=0.6.0=py_1001
- pyfaidx=0.5.8=py_1
- pygments=2.4.2=py_0
- python=3.6.7=h357f687_1005
- readline=8.0=hf8c457e_0
- samtools=1.9=h10a08f8_12
- setuptools=41.0.1=py36_0
- sqlite=3.29.0=hcee41ef_0
- tk=8.6.9=hed695b0_1002
- traitlets=4.3.3=py36_0
- wcwidth=0.1.7=py_1
- wheel=0.33.4=py36_0
- xz=5.2.4=h14c3975_1001
- zlib=1.2.11=h516909a_1005
- pip:
- absl-py==0.7.1
- argcomplete==1.10.0
- argparse==1.4.0
- asn1crypto==1.1.0
- astor==0.8.0
- atomicwrites==1.3.0
- awscli==1.16.258
- boto3==1.9.248
- botocore==1.12.248
- cachetools==3.1.1
- cellsnp==0.1.7
- cffi==1.12.3
- chardet==3.0.4
- colorama==0.4.1
- colour==0.1.5
- commonmark==0.9.1
- crc32c==1.7
- cryptography==2.3.1
- cycler==0.10.0
- cython==0.29.14
- dcplib==2.1.2
- docutils==0.15.2
- gast==0.2.2
- google-auth==1.6.3
- google-auth-oauthlib==0.4.1
- google-pasta==0.1.7
- grpcio==1.22.0
- h5py==2.9.0
- hca==6.4.0
- idna==2.8
- jinja2==2.10.3
- jmespath==0.9.4
- joblib==0.14.0
- jsonpointer==1.14
- jsonschema==2.6.0
- keras-applications==1.0.8
- keras-preprocessing==1.1.0
- kiwisolver==1.1.0
- markdown==3.1.1
- markupsafe==1.1.1
- matplotlib==3.1.1
- numpy==1.16.4
- oauthlib==3.1.0
- protobuf==3.9.0
- puremagic==1.4
- pyasn1==0.4.7
- pyasn1-modules==0.2.7
- pycparser==2.19
- pyfasta==0.5.2
- pyjwt==1.7.1
- pyparsing==2.4.2
- pysam==0.15.2
- pystan==2.19.1.1
- python-dateutil==2.8.0
- pyvcf==0.6.8
- pyyaml==5.1.2
- requests==2.22.0
- requests-oauthlib==1.2.0
- rsa==3.4.2
- s3transfer==0.2.1
- scikit-learn==0.21.3
- scipy==1.3.0
- six==1.12.0
- tenacity==5.0.4
- tensorboard==1.14.0
- tensorflow==1.14.0
- tensorflow-estimator==1.14.0
- termcolor==1.1.0
- tweak==1.0.3
- urllib3==1.25.6
- vireosnp==0.1.5
- werkzeug==0.15.5
- wrapt==1.11.2
prefix: /lustre/scratch118/malaria/team222/hh5/software/miniconda3/envs/souporcell