influx_si can be used for estimation of metabolic fluxes and concentrations based on labeling data from MS and/or NMR measurements. influx_s is used for stationary labeling and influx_i for instationary one (hence the '_s' and '_i' in the names). The name influx_si is used as common for both tools.
The input for influx_si is an MTF (Multiple TSV Files) collection describing metabolic network, label transition, labeling data and options to use during estimation.
The output is a zip archive with files generated by influx_si. File ending with .tvar.sim which contains the estimated fluxes and concentrations. Other files ending with .sim contain simulated measurements. File ending with .stat has results of chi2 test assessing quality of fit.
If, in your .opt file, you have requested plotting information (plot_smeas.R or plot_ilab.R), it can be found in the respective .pdf file.
For detailed documentation about influx_si and accompanying tools see https://influx-si.readthedocs.io
For getting a standalone version of influx_si, you can install it e.g. with conda package manager:
conda install -c conda-forge -c bioconda influx_si
Author: Serguei Sokol
License: GPL2
© INRAE/INSA/CNRS 2023