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lalign.htm
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<html>
<head>
<title>LALIGN Local Alignments</title></head>
<h2 align=center>LALIGN - Local Alignments</h2>
<form action="http://fasta.bioch.virginia.edu/fasta/cgi/lalign.cgi" method=post>
<b>Sequence type:</b><br>
<input type=radio name="seqtype" value=1 checked>Protein
<input type=radio name="seqtype" value=2>DNA
<input type=radio name="seqtype" value=3>DNA (rev-comp)<br><br>
<table border=3>
<tr>
<td align="left" colspan=2>
<b>Enter first sequence: </b><select name="in_seq1"><option>FASTA format<option>Accession/GI number</select>
<b>Subset range:</b>
<input type=text name="ssr1" maxlength=10 size=10></input>
</td>
</tr>
<tr>
<td>
<textarea name="seq1" rows=6 cols=60 wrap=hard align=left></textarea>
</td>
<td>
<a href="http://www.ncbi.nlm.nih.gov/Entrez/protein.html" target="entrez_window">Entrez protein sequence browser</A><br><br>
<a href="http://www.ncbi.nlm.nih.gov/Entrez/nucleotide.html" target="entrez_window">Entrez DNA sequence browser</A>
</td>
</tr>
<tr>
<td align="left" colspan="2">
<b>Enter second sequence: </b><select name="in_seq2"><option>FASTA format<option>Accession/GI number</select>
<b>Subset range:</b>
<input type=text name="ssr2" maxlength=10 size=10></input>
</td>
</tr>
<tr>
<td>
<textarea name="seq2" rows=6 cols=60 wrap=hard align=left></textarea>
</td>
<td valign="center" align="center">
<input type=submit name="input" value="Align Sequences">
<!--
<p>
Graphics
<br>
<input type=radio name="plgraph" value=0 checked>None
<input type=radio name="plgraph" value=1>Plot
<input type=radio name="plgraph" value=2>PDF
-->
</td>
</tr>
</table>
<br><br>
<b>Other options:</b><br>
<b>Number of alignments:</b>
<input type=text name="num_aln" maxlength=3 size=3 value="10"></input>
<b>Protein matrix:</b>
<select name = "matrix">
<option> Default
<option> Blosum50
<option> Blosum62
<option> Blosum80
<option> Pam250
<option> Pam120
<option> MDM20
<option> MDM10
</select>
<b>gap:</b>
<input type=text name="gap" maxlength=3 size=3></input>
<b>ext:</b>
<input type=text name="ext" maxlength=3 size=3></input>
<br><br>
<hr>
<CENTER>
<a href="home.html">FASTA Home</a> | <a href="cgi/searchx.cgi">Search FASTA</a> |
<a href="ftp://ftp.virginia.edu/pub/fasta/"> Get FASTA</a> |
<a href="http://www.med.virginia.edu/~wrp/pearson.html">About the Author </a>
<hr>
<br>
<font size=-1><i><br>
Copyright 1988, 1991, 1992, 1993, 1994 1995, 1997 by
William R. Pearson and the University of Virginia. All rights
reserved. The FASTA program and documentation may not be sold or
incorporated into a commercial product, in whole or in part, without
written consent of William R. Pearson and the University of Virginia.
</center>
</body>
</frameset>
</html>