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question about chromosome painting #1

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jting-dev opened this issue Feb 28, 2023 · 1 comment
Open

question about chromosome painting #1

jting-dev opened this issue Feb 28, 2023 · 1 comment

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@jting-dev
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when I ran the painting.py I came across such a bug:
File "........./scenarios/inferringAncestorGenomeStructure/BlockMatchingOptimization.py", line 66, in <genexpr> (i[0][3] * match_matrix[int(i[0][1] / (self.__matching_dim1*2)), KeyError: (87, 1, 0)
It only appear when I draw the chromosome rearrangement plot for M.domestica (apple), it has undergone one WGD event. but for other species without WGD there is no problem. so it seems like the bug is related to WGD ?
How can I fix it. thank you !

@865699871
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Sorry for the late reply, have you solved the problem?
I cannot determine where the problem is only based on this log.
It may be due to the input format. Can you send us your input data by e-mail? gaoxian15002970749@163.com

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