DESCRIPTION

Package: MMRDetect
Title: Mutational Signature-based Classifier for Detecting Mismatch Repair Deficiency in Tumors
Version: 0.0.0.9000
Authors@R: 
    person(given = "Xueqing",
           family = "Zou",
           role = c("aut", "cre"),
           email = "xz388@cam.ac.uk",
           comment = c(ORCID = "0000-0003-1143-1028"))
Description: MMRDetect is a logistic regression classifier using new mutational-signatures-based parameters to detect MMR-deficient tumors.
License: `use_mit_license()`
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Depends: 
    R (>= 2.10)
Imports:
    reshape2,
    plyr,
    gridExtra,
    scales,
    factoextra,
    VariantAnnotation,
    GenomicFeatures,
    BSgenome.Hsapiens.UCSC.hg19,
    Biostrings,
    signature.tools.lib,
    stats,
    rlang
Suggests: 
    knitr,
    rmarkdown,
    testthat
VignetteBuilder: knitr