.travis.yml

language: python

python:
#  - "2.6" << misses pysam 'import sysconfig' => 'ImportError: No module named sysconfig'
  - "2.7"

# Needs FuMa, which needs HTSeq ported to Py3
#  - "3.2"
#  - "3.3"
#  - "3.4"
#  - "3.5"
#  - "3.5-dev" # 3.5 development branch
#  - "nightly" # currently points to 3.6-dev

before_install:
  - sudo apt-get install -qq build-essential gfortran libatlas-base-dev python-pip python-dev

install:
  - sudo pip install flake8
#  - virtualenv -p python2 .venv_pysam_0_9 ; source .venv_pysam_0_9/bin/activate ; pip install pysam==0.9 ; pip install -r requirements.txt ; python setup.py install ; pip install flake8 nose ; deactivate
  - virtualenv -p python2 .venv_pysam_0_10 ; source .venv_pysam_0_10/bin/activate ; pip install scipy ; pip install numpy ; pip install --use-wheel pysam==0.10 ; pip install -r requirements.txt ; python setup.py install ; pip install flake8 nose ; deactivate

script:
#  - source .venv_pysam_0_9/bin/activate && python -c 'import pysam; print (pysam.__version__)' && nosetests -v tests/*.py && deactivate && source .venv_pysam_0_10/bin/activate && python -c 'import pysam; print (pysam.__version__)' && nosetests -v tests/*.py && deactivate
  - source .venv_pysam_0_10/bin/activate && python -c 'import pysam; print (pysam.__version__)' && nosetests -v tests/*.py && deactivate
  - cd "$TRAVIS_BUILD_DIR" && sudo pip install flake8 && ./scripts/flake8.sh

# cache: pip

notifications:
  email: false