diff --git a/docs/html/processes.html b/docs/html/processes.html
index 2e62cd2..9699003 100644
--- a/docs/html/processes.html
+++ b/docs/html/processes.html
@@ -49,7 +49,7 @@
Model Configuration
Simulation and KPI extraction
Histopathology processes
-
`Jupyter notebooks <https://github.com/yinchi/histopath-bim-des/tree/main/notebooks>`_
+
Jupyter notebooks
API reference:
API reference:
API reference:
diff --git a/docs/html/searchindex.js b/docs/html/searchindex.js
index 5bc5d49..73e03ea 100644
--- a/docs/html/searchindex.js
+++ b/docs/html/searchindex.js
@@ -1 +1 @@
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"histopath_bim_des.config.global_vars.Globals.num_slides_larges", false]], "num_slides_larges (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.num_slides_larges", false]], "num_slides_levels (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.num_slides_levels", false]], "num_slides_levels (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.num_slides_levels", false]], "num_slides_megas (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.num_slides_megas", false]], "num_slides_megas (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.num_slides_megas", false]], "num_slides_serials (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.num_slides_serials", false]], "num_slides_serials (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.num_slides_serials", false]], "out (histopath_bim_des.process.core.runnerdurations attribute)": [[15, "histopath_bim_des.process.core.RunnerDurations.out", false]], "out_process (histopath_bim_des.process.core.batchingprocess attribute)": [[15, "histopath_bim_des.process.core.BatchingProcess.out_process", false]], "out_process (histopath_bim_des.process.core.collationprocess attribute)": [[15, "histopath_bim_des.process.core.CollationProcess.out_process", false]], "out_process (histopath_bim_des.process.core.deliveryprocess attribute)": [[15, "histopath_bim_des.process.core.DeliveryProcess.out_process", false]], "parent (histopath_bim_des.specimens.component attribute)": [[25, "histopath_bim_des.specimens.Component.parent", false]], "path (histopath_bim_des.config.runners.pathdefinition attribute)": [[9, "histopath_bim_des.config.runners.PathDefinition.path", false]], "pathdefinition (class in histopath_bim_des.config.runners)": [[9, "histopath_bim_des.config.runners.PathDefinition", false]], "pert (class in histopath_bim_des.distribution)": [[11, "histopath_bim_des.distribution.PERT", false]], "pert (histopath_bim_des.distribution.intpert attribute)": [[11, "histopath_bim_des.distribution.IntPERT.pert", false]], "plot_floor() (histopath_bim_des.bim.shapelymodel method)": [[1, "histopath_bim_des.bim.ShapelyModel.plot_floor", false]], "post_processing() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.post_processing", false]], "post_scanning() (in module histopath_bim_des.process.p70_scanning)": [[22, "histopath_bim_des.process.p70_scanning.post_scanning", false]], "post_staining() (in module histopath_bim_des.process.p50_staining)": [[20, "histopath_bim_des.process.p50_staining.post_staining", false]], "pre_booking_in_investigation (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.pre_booking_in_investigation", false]], "pre_booking_in_investigation (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.pre_booking_in_investigation", false]], "print_info() (histopath_bim_des.distribution.pert method)": [[11, "histopath_bim_des.distribution.PERT.print_info", false]], "prio (histopath_bim_des.specimens.component attribute)": [[25, "histopath_bim_des.specimens.Component.prio", false]], "priority (class in histopath_bim_des.specimens)": [[25, "histopath_bim_des.specimens.Priority", false]], "priority (histopath_bim_des.specimens.priority attribute)": [[25, "histopath_bim_des.specimens.Priority.PRIORITY", false]], "prob_bms_cutup (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_bms_cutup", false]], "prob_bms_cutup (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_bms_cutup", false]], "prob_bms_cutup_urgent (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_bms_cutup_urgent", false]], "prob_bms_cutup_urgent (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_bms_cutup_urgent", false]], "prob_decalc_bone (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_decalc_bone", false]], "prob_decalc_bone (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_decalc_bone", false]], "prob_decalc_oven (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_decalc_oven", false]], "prob_decalc_oven (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_decalc_oven", false]], "prob_internal (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_internal", false]], "prob_internal (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_internal", false]], "prob_invest_easy (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_invest_easy", false]], "prob_invest_easy (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_invest_easy", false]], "prob_invest_external (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_invest_external", false]], "prob_invest_external (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_invest_external", false]], "prob_invest_hard (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_invest_hard", false]], "prob_invest_hard (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_invest_hard", false]], "prob_large_cutup (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_large_cutup", false]], "prob_large_cutup (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_large_cutup", false]], "prob_large_cutup_urgent (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_large_cutup_urgent", false]], "prob_large_cutup_urgent (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_large_cutup_urgent", false]], "prob_mega_blocks (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_mega_blocks", false]], "prob_mega_blocks (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_mega_blocks", false]], "prob_microtomy_levels (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_microtomy_levels", false]], "prob_microtomy_levels (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_microtomy_levels", false]], "prob_pool_cutup (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_pool_cutup", false]], "prob_pool_cutup (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_pool_cutup", false]], "prob_pool_cutup_urgent (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_pool_cutup_urgent", false]], "prob_pool_cutup_urgent (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_pool_cutup_urgent", false]], "prob_prebook (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_prebook", false]], "prob_prebook (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_prebook", false]], "prob_priority_cancer (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_priority_cancer", false]], "prob_priority_cancer (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_priority_cancer", false]], "prob_priority_non_cancer (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_priority_non_cancer", false]], "prob_priority_non_cancer (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_priority_non_cancer", false]], "prob_urgent_cancer (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_urgent_cancer", false]], "prob_urgent_cancer (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_urgent_cancer", false]], "prob_urgent_non_cancer (histopath_bim_des.config.global_vars.globals attribute)": [[7, "histopath_bim_des.config.global_vars.Globals.prob_urgent_non_cancer", false]], "prob_urgent_non_cancer (histopath_bim_des.model.globals attribute)": [[13, "histopath_bim_des.model.Globals.prob_urgent_non_cancer", false]], "process (class in histopath_bim_des.process.core)": [[15, "histopath_bim_des.process.core.Process", false]], "process() (histopath_bim_des.process.core.arrivalgenerator method)": [[15, "histopath_bim_des.process.core.ArrivalGenerator.process", false]], "process() (histopath_bim_des.process.core.baseprocess method)": [[15, "histopath_bim_des.process.core.BaseProcess.process", false]], "process() (histopath_bim_des.process.core.batchingprocess method)": [[15, "histopath_bim_des.process.core.BatchingProcess.process", false]], "process() (histopath_bim_des.process.core.collationprocess method)": [[15, "histopath_bim_des.process.core.CollationProcess.process", false]], "process() (histopath_bim_des.process.core.deliveryprocess method)": [[15, "histopath_bim_des.process.core.DeliveryProcess.process", false]], "process() (histopath_bim_des.process.core.process method)": [[15, "histopath_bim_des.process.core.Process.process", false]], "process() (histopath_bim_des.process.core.resourcescheduler method)": [[15, "histopath_bim_des.process.core.ResourceScheduler.process", false]], "process() (histopath_bim_des.specimens.specimen method)": [[25, "histopath_bim_des.specimens.Specimen.process", false]], "processdoormap (class in histopath_bim_des.config.runners)": [[9, "histopath_bim_des.config.runners.ProcessDoorMap", false]], "processes (histopath_bim_des.model.model attribute)": [[13, "histopath_bim_des.model.Model.processes", false]], "processing (histopath_bim_des.config.runners.processdoormap attribute)": [[9, "histopath_bim_des.config.runners.ProcessDoorMap.processing", false]], "processing_assign_queue() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.processing_assign_queue", false]], "processing_generic() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.processing_generic", false]], "processing_large_surgicals (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.processing_large_surgicals", false]], "processing_large_surgicals (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.processing_large_surgicals", false]], "processing_larges() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.processing_larges", false]], "processing_machine (histopath_bim_des.config.resources.resourcesinfo attribute)": [[8, "histopath_bim_des.config.resources.ResourcesInfo.processing_machine", false]], "processing_machine (histopath_bim_des.model.resources attribute)": [[13, "histopath_bim_des.model.Resources.processing_machine", false]], "processing_megas (histopath_bim_des.config.batching.batchsizes attribute)": [[4, "histopath_bim_des.config.batching.BatchSizes.processing_megas", false]], "processing_megas (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.processing_megas", false]], "processing_megas (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.processing_megas", false]], "processing_megas() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.processing_megas", false]], "processing_microtomy (histopath_bim_des.config.runners.runnertimesconfig attribute)": [[9, "histopath_bim_des.config.runners.RunnerTimesConfig.processing_microtomy", false]], "processing_microtomy (histopath_bim_des.model.runnertimes attribute)": [[13, "histopath_bim_des.model.RunnerTimes.processing_microtomy", false]], "processing_regular (histopath_bim_des.config.batching.batchsizes attribute)": [[4, "histopath_bim_des.config.batching.BatchSizes.processing_regular", false]], "processing_room_staff (histopath_bim_des.config.resources.resourcesinfo attribute)": [[8, "histopath_bim_des.config.resources.ResourcesInfo.processing_room_staff", false]], "processing_room_staff (histopath_bim_des.model.resources attribute)": [[13, "histopath_bim_des.model.Resources.processing_room_staff", false]], "processing_small_surgicals (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.processing_small_surgicals", false]], "processing_small_surgicals (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.processing_small_surgicals", false]], "processing_smalls() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.processing_smalls", false]], "processing_start() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.processing_start", false]], "processing_urgent (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.processing_urgent", false]], "processing_urgent (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.processing_urgent", false]], "processing_urgents() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.processing_urgents", false]], "qc (histopath_bim_des.config.runners.processdoormap attribute)": [[9, "histopath_bim_des.config.runners.ProcessDoorMap.qc", false]], "qc() (in module histopath_bim_des.process.p80_qc)": [[23, "histopath_bim_des.process.p80_qc.qc", false]], "qc_staff (histopath_bim_des.config.resources.resourcesinfo attribute)": [[8, "histopath_bim_des.config.resources.ResourcesInfo.qc_staff", false]], "qc_staff (histopath_bim_des.model.resources attribute)": [[13, "histopath_bim_des.model.Resources.qc_staff", false]], "rates (histopath_bim_des.config.arrivals.arrivalschedule attribute)": [[3, "histopath_bim_des.config.arrivals.ArrivalSchedule.rates", false]], "receive_and_sort (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.receive_and_sort", false]], "receive_and_sort (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.receive_and_sort", false]], "reception (histopath_bim_des.config.runners.processdoormap attribute)": [[9, "histopath_bim_des.config.runners.ProcessDoorMap.reception", false]], "reception_cutup (histopath_bim_des.config.runners.runnertimesconfig attribute)": [[9, "histopath_bim_des.config.runners.RunnerTimesConfig.reception_cutup", false]], "reception_cutup (histopath_bim_des.model.runnertimes attribute)": [[13, "histopath_bim_des.model.RunnerTimes.reception_cutup", false]], "register_process() (in module histopath_bim_des.process.core)": [[15, "histopath_bim_des.process.core.register_process", false]], "register_processes() (in module histopath_bim_des.process.p10_reception)": [[16, "histopath_bim_des.process.p10_reception.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p20_cutup)": [[17, "histopath_bim_des.process.p20_cutup.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p40_microtomy)": [[19, "histopath_bim_des.process.p40_microtomy.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p50_staining)": [[20, "histopath_bim_des.process.p50_staining.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p60_labelling)": [[21, "histopath_bim_des.process.p60_labelling.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p70_scanning)": [[22, "histopath_bim_des.process.p70_scanning.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p80_qc)": [[23, "histopath_bim_des.process.p80_qc.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p90_reporting)": [[24, "histopath_bim_des.process.p90_reporting.register_processes", false]], "remove_table_filters() (in module histopath_bim_des.excel)": [[12, "histopath_bim_des.excel.remove_table_filters", false]], "report() (in module histopath_bim_des.process.p90_reporting)": [[24, "histopath_bim_des.process.p90_reporting.report", false]], "resource (histopath_bim_des.process.core.resourcescheduler attribute)": [[15, "histopath_bim_des.process.core.ResourceScheduler.resource", false]], "resource_allocation_interval_hours (in module histopath_bim_des.util)": [[26, "histopath_bim_des.util.RESOURCE_ALLOCATION_INTERVAL_HOURS", false]], "resourceinfo (class in histopath_bim_des.config.resources)": [[8, "histopath_bim_des.config.resources.ResourceInfo", false]], "resources (class in histopath_bim_des.model)": [[13, "histopath_bim_des.model.Resources", false]], "resources (histopath_bim_des.config.config.config attribute)": [[5, "histopath_bim_des.config.config.Config.resources", false]], "resources (histopath_bim_des.model.model attribute)": [[13, "histopath_bim_des.model.Model.resources", false]], "resourceschedule (class in histopath_bim_des.config.resources)": [[8, "histopath_bim_des.config.resources.ResourceSchedule", false]], "resourcescheduler (class in histopath_bim_des.process.core)": [[15, 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29, "you": 13, "your": 31}, "titles": ["histopath_bim_des package", "histopath_bim_des.bim module", "histopath_bim_des.config package", "histopath_bim_des.config.arrivals module", "histopath_bim_des.config.batching module", "histopath_bim_des.config.config module", "histopath_bim_des.config.distributions module", "histopath_bim_des.config.global_vars module", "histopath_bim_des.config.resources module", "histopath_bim_des.config.runners module", "histopath_bim_des.config.tasks module", "histopath_bim_des.distribution module", "histopath_bim_des.excel module", "histopath_bim_des.model module", "histopath_bim_des.process package", "histopath_bim_des.process.core module", "histopath_bim_des.process.p10_reception module", "histopath_bim_des.process.p20_cutup module", "histopath_bim_des.process.p30_processing module", "histopath_bim_des.process.p40_microtomy module", "histopath_bim_des.process.p50_staining module", "histopath_bim_des.process.p60_labelling module", 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\ No newline at end of file
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"histopath_bim_des.config.resources.ResourcesInfo.processing_machine", false]], "processing_machine (histopath_bim_des.model.resources attribute)": [[13, "histopath_bim_des.model.Resources.processing_machine", false]], "processing_megas (histopath_bim_des.config.batching.batchsizes attribute)": [[4, "histopath_bim_des.config.batching.BatchSizes.processing_megas", false]], "processing_megas (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.processing_megas", false]], "processing_megas (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.processing_megas", false]], "processing_megas() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.processing_megas", false]], "processing_microtomy (histopath_bim_des.config.runners.runnertimesconfig attribute)": [[9, "histopath_bim_des.config.runners.RunnerTimesConfig.processing_microtomy", false]], "processing_microtomy (histopath_bim_des.model.runnertimes attribute)": [[13, "histopath_bim_des.model.RunnerTimes.processing_microtomy", false]], "processing_regular (histopath_bim_des.config.batching.batchsizes attribute)": [[4, "histopath_bim_des.config.batching.BatchSizes.processing_regular", false]], "processing_room_staff (histopath_bim_des.config.resources.resourcesinfo attribute)": [[8, "histopath_bim_des.config.resources.ResourcesInfo.processing_room_staff", false]], "processing_room_staff (histopath_bim_des.model.resources attribute)": [[13, "histopath_bim_des.model.Resources.processing_room_staff", false]], "processing_small_surgicals (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.processing_small_surgicals", false]], "processing_small_surgicals (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.processing_small_surgicals", false]], "processing_smalls() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.processing_smalls", false]], "processing_start() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.processing_start", false]], "processing_urgent (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.processing_urgent", false]], "processing_urgent (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.processing_urgent", false]], "processing_urgents() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.processing_urgents", false]], "qc (histopath_bim_des.config.runners.processdoormap attribute)": [[9, "histopath_bim_des.config.runners.ProcessDoorMap.qc", false]], "qc() (in module histopath_bim_des.process.p80_qc)": [[23, "histopath_bim_des.process.p80_qc.qc", false]], "qc_staff (histopath_bim_des.config.resources.resourcesinfo attribute)": [[8, "histopath_bim_des.config.resources.ResourcesInfo.qc_staff", false]], "qc_staff (histopath_bim_des.model.resources attribute)": [[13, "histopath_bim_des.model.Resources.qc_staff", false]], "rates (histopath_bim_des.config.arrivals.arrivalschedule attribute)": [[3, "histopath_bim_des.config.arrivals.ArrivalSchedule.rates", false]], "receive_and_sort (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.receive_and_sort", false]], "receive_and_sort (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.receive_and_sort", false]], "reception (histopath_bim_des.config.runners.processdoormap attribute)": [[9, "histopath_bim_des.config.runners.ProcessDoorMap.reception", false]], "reception_cutup (histopath_bim_des.config.runners.runnertimesconfig attribute)": [[9, "histopath_bim_des.config.runners.RunnerTimesConfig.reception_cutup", false]], "reception_cutup (histopath_bim_des.model.runnertimes attribute)": [[13, "histopath_bim_des.model.RunnerTimes.reception_cutup", false]], "register_process() (in module histopath_bim_des.process.core)": [[15, "histopath_bim_des.process.core.register_process", false]], "register_processes() (in module histopath_bim_des.process.p10_reception)": [[16, "histopath_bim_des.process.p10_reception.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p20_cutup)": [[17, "histopath_bim_des.process.p20_cutup.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p30_processing)": [[18, "histopath_bim_des.process.p30_processing.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p40_microtomy)": [[19, "histopath_bim_des.process.p40_microtomy.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p50_staining)": [[20, "histopath_bim_des.process.p50_staining.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p60_labelling)": [[21, "histopath_bim_des.process.p60_labelling.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p70_scanning)": [[22, "histopath_bim_des.process.p70_scanning.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p80_qc)": [[23, "histopath_bim_des.process.p80_qc.register_processes", false]], "register_processes() (in module histopath_bim_des.process.p90_reporting)": [[24, "histopath_bim_des.process.p90_reporting.register_processes", false]], "remove_table_filters() (in module histopath_bim_des.excel)": [[12, "histopath_bim_des.excel.remove_table_filters", false]], "report() (in module histopath_bim_des.process.p90_reporting)": [[24, "histopath_bim_des.process.p90_reporting.report", false]], "resource (histopath_bim_des.process.core.resourcescheduler attribute)": [[15, "histopath_bim_des.process.core.ResourceScheduler.resource", false]], "resource_allocation_interval_hours (in module histopath_bim_des.util)": [[26, "histopath_bim_des.util.RESOURCE_ALLOCATION_INTERVAL_HOURS", false]], "resourceinfo (class in histopath_bim_des.config.resources)": [[8, "histopath_bim_des.config.resources.ResourceInfo", false]], "resources (class in histopath_bim_des.model)": [[13, "histopath_bim_des.model.Resources", false]], "resources (histopath_bim_des.config.config.config attribute)": [[5, "histopath_bim_des.config.config.Config.resources", false]], "resources (histopath_bim_des.model.model attribute)": [[13, "histopath_bim_des.model.Model.resources", false]], "resourceschedule (class in histopath_bim_des.config.resources)": [[8, "histopath_bim_des.config.resources.ResourceSchedule", false]], "resourcescheduler (class in histopath_bim_des.process.core)": [[15, "histopath_bim_des.process.core.ResourceScheduler", false]], "resourcesinfo (class in histopath_bim_des.config.resources)": [[8, "histopath_bim_des.config.resources.ResourcesInfo", false]], "retur (histopath_bim_des.process.core.runnerdurations attribute)": [[15, "histopath_bim_des.process.core.RunnerDurations.retur", false]], "routine (histopath_bim_des.specimens.priority attribute)": [[25, "histopath_bim_des.specimens.Priority.ROUTINE", false]], "run() (histopath_bim_des.model.model method)": [[13, "histopath_bim_des.model.Model.run", false]], "runner (histopath_bim_des.process.core.deliveryprocess attribute)": [[15, "histopath_bim_des.process.core.DeliveryProcess.runner", false]], "runner_speed (histopath_bim_des.config.runners.runnerconfig attribute)": [[9, "histopath_bim_des.config.runners.RunnerConfig.runner_speed", false]], "runner_times (histopath_bim_des.config.config.config attribute)": [[5, "histopath_bim_des.config.config.Config.runner_times", false]], "runner_times() (in module histopath_bim_des.bim)": [[1, "histopath_bim_des.bim.runner_times", false]], "runnerconfig (class in histopath_bim_des.config.runners)": [[9, "histopath_bim_des.config.runners.RunnerConfig", false]], "runnerdurations (class in histopath_bim_des.process.core)": [[15, "histopath_bim_des.process.core.RunnerDurations", false]], "runnerextradurations (class in histopath_bim_des.config.runners)": [[9, "histopath_bim_des.config.runners.RunnerExtraDurations", false]], "runnertimes (class in histopath_bim_des.model)": [[13, "histopath_bim_des.model.RunnerTimes", false]], "runnertimesconfig (class in histopath_bim_des.config.runners)": [[9, "histopath_bim_des.config.runners.RunnerTimesConfig", false]], "sample() (histopath_bim_des.distribution.intpert method)": [[11, "histopath_bim_des.distribution.IntPERT.sample", false]], "sample() (histopath_bim_des.distribution.inttri method)": [[11, "histopath_bim_des.distribution.IntTri.sample", false]], "sample() (histopath_bim_des.distribution.pert method)": [[11, "histopath_bim_des.distribution.PERT.sample", false]], "scanning (histopath_bim_des.config.runners.processdoormap attribute)": [[9, "histopath_bim_des.config.runners.ProcessDoorMap.scanning", false]], "scanning_generic() (in module histopath_bim_des.process.p70_scanning)": [[22, "histopath_bim_des.process.p70_scanning.scanning_generic", false]], "scanning_machine_megas (histopath_bim_des.config.resources.resourcesinfo attribute)": [[8, "histopath_bim_des.config.resources.ResourcesInfo.scanning_machine_megas", false]], "scanning_machine_megas (histopath_bim_des.model.resources attribute)": [[13, "histopath_bim_des.model.Resources.scanning_machine_megas", false]], "scanning_machine_regular (histopath_bim_des.config.resources.resourcesinfo attribute)": [[8, "histopath_bim_des.config.resources.ResourcesInfo.scanning_machine_regular", false]], "scanning_machine_regular (histopath_bim_des.model.resources attribute)": [[13, "histopath_bim_des.model.Resources.scanning_machine_regular", false]], "scanning_megas (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.scanning_megas", false]], "scanning_megas (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.scanning_megas", false]], "scanning_megas() (in module histopath_bim_des.process.p70_scanning)": [[22, "histopath_bim_des.process.p70_scanning.scanning_megas", false]], "scanning_qc (histopath_bim_des.config.runners.runnertimesconfig attribute)": [[9, "histopath_bim_des.config.runners.RunnerTimesConfig.scanning_qc", false]], "scanning_qc (histopath_bim_des.model.runnertimes attribute)": [[13, "histopath_bim_des.model.RunnerTimes.scanning_qc", false]], "scanning_regular (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.scanning_regular", false]], "scanning_regular (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.scanning_regular", false]], "scanning_regular() (in module histopath_bim_des.process.p70_scanning)": [[22, "histopath_bim_des.process.p70_scanning.scanning_regular", false]], "scanning_staff (histopath_bim_des.config.resources.resourcesinfo attribute)": [[8, "histopath_bim_des.config.resources.ResourcesInfo.scanning_staff", false]], "scanning_staff (histopath_bim_des.model.resources attribute)": [[13, "histopath_bim_des.model.Resources.scanning_staff", false]], "scanning_start() (in module histopath_bim_des.process.p70_scanning)": [[22, "histopath_bim_des.process.p70_scanning.scanning_start", false]], "schedule (histopath_bim_des.config.resources.resourceinfo attribute)": [[8, "histopath_bim_des.config.resources.ResourceInfo.schedule", false]], "schedule (histopath_bim_des.process.core.resourcescheduler attribute)": [[15, "histopath_bim_des.process.core.ResourceScheduler.schedule", false]], "setup() (histopath_bim_des.model.model method)": [[13, "histopath_bim_des.model.Model.setup", false]], "setup() (histopath_bim_des.process.core.arrivalgenerator method)": [[15, "histopath_bim_des.process.core.ArrivalGenerator.setup", false]], "setup() (histopath_bim_des.process.core.baseprocess method)": [[15, "histopath_bim_des.process.core.BaseProcess.setup", false]], "setup() (histopath_bim_des.process.core.batchingprocess method)": [[15, "histopath_bim_des.process.core.BatchingProcess.setup", false]], "setup() (histopath_bim_des.process.core.collationprocess method)": [[15, "histopath_bim_des.process.core.CollationProcess.setup", false]], "setup() (histopath_bim_des.process.core.deliveryprocess method)": [[15, "histopath_bim_des.process.core.DeliveryProcess.setup", false]], "setup() (histopath_bim_des.process.core.process method)": [[15, "histopath_bim_des.process.core.Process.setup", false]], "setup() (histopath_bim_des.process.core.resourcescheduler method)": [[15, "histopath_bim_des.process.core.ResourceScheduler.setup", false]], "setup() (histopath_bim_des.specimens.batch method)": [[25, "histopath_bim_des.specimens.Batch.setup", false]], "setup() (histopath_bim_des.specimens.block method)": [[25, "histopath_bim_des.specimens.Block.setup", false]], "setup() (histopath_bim_des.specimens.slide method)": [[25, "histopath_bim_des.specimens.Slide.setup", false]], "setup() (histopath_bim_des.specimens.specimen method)": [[25, "histopath_bim_des.specimens.Specimen.setup", false]], "shapelymodel (class in histopath_bim_des.bim)": [[1, "histopath_bim_des.bim.ShapelyModel", false]], "shortest_path() (histopath_bim_des.bim.shapelymodel method)": [[1, "histopath_bim_des.bim.ShapelyModel.shortest_path", false]], "sim_hours (histopath_bim_des.config.config.config attribute)": [[5, "histopath_bim_des.config.config.Config.sim_hours", false]], "sim_length (histopath_bim_des.model.model attribute)": [[13, "histopath_bim_des.model.Model.sim_length", false]], "slide (class in histopath_bim_des.specimens)": [[25, "histopath_bim_des.specimens.Slide", false]], "specimen (class in histopath_bim_des.specimens)": [[25, "histopath_bim_des.specimens.Specimen", false]], "specimen_data (histopath_bim_des.model.model attribute)": [[13, "histopath_bim_des.model.Model.specimen_data", false]], "staining (histopath_bim_des.config.runners.processdoormap attribute)": [[9, "histopath_bim_des.config.runners.ProcessDoorMap.staining", false]], "staining_labelling (histopath_bim_des.config.runners.runnertimesconfig attribute)": [[9, "histopath_bim_des.config.runners.RunnerTimesConfig.staining_labelling", false]], "staining_labelling (histopath_bim_des.model.runnertimes attribute)": [[13, "histopath_bim_des.model.RunnerTimes.staining_labelling", false]], "staining_machine (histopath_bim_des.config.resources.resourcesinfo attribute)": [[8, "histopath_bim_des.config.resources.ResourcesInfo.staining_machine", false]], "staining_machine (histopath_bim_des.model.resources attribute)": [[13, "histopath_bim_des.model.Resources.staining_machine", false]], "staining_megas (histopath_bim_des.config.batching.batchsizes attribute)": [[4, "histopath_bim_des.config.batching.BatchSizes.staining_megas", false]], "staining_megas (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.staining_megas", false]], "staining_megas (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.staining_megas", false]], "staining_megas() (in module histopath_bim_des.process.p50_staining)": [[20, "histopath_bim_des.process.p50_staining.staining_megas", false]], "staining_regular (histopath_bim_des.config.batching.batchsizes attribute)": [[4, "histopath_bim_des.config.batching.BatchSizes.staining_regular", false]], "staining_regular (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.staining_regular", false]], "staining_regular (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.staining_regular", false]], "staining_regular() (in module histopath_bim_des.process.p50_staining)": [[20, "histopath_bim_des.process.p50_staining.staining_regular", false]], "staining_staff (histopath_bim_des.config.resources.resourcesinfo attribute)": [[8, "histopath_bim_des.config.resources.ResourcesInfo.staining_staff", false]], "staining_staff (histopath_bim_des.model.resources attribute)": [[13, "histopath_bim_des.model.Resources.staining_staff", false]], "staining_start() (in module histopath_bim_des.process.p50_staining)": [[20, "histopath_bim_des.process.p50_staining.staining_start", false]], "task_durations (histopath_bim_des.config.config.config attribute)": [[5, "histopath_bim_des.config.config.Config.task_durations", false]], "task_durations (histopath_bim_des.model.model attribute)": [[13, "histopath_bim_des.model.Model.task_durations", false]], "taskdurations (class in histopath_bim_des.model)": [[13, "histopath_bim_des.model.TaskDurations", false]], "taskdurationsinfo (class in histopath_bim_des.config.tasks)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo", false]], "time_unit (histopath_bim_des.config.distributions.distributioninfo attribute)": [[6, "histopath_bim_des.config.distributions.DistributionInfo.time_unit", false]], "timestamp() (histopath_bim_des.specimens.specimen method)": [[25, "histopath_bim_des.specimens.Specimen.timestamp", false]], "to_shapely() (histopath_bim_des.bim.bimmodel method)": [[1, "histopath_bim_des.bim.BimModel.to_shapely", false]], "total (histopath_bim_des.model.wips attribute)": [[13, "histopath_bim_des.model.Wips.total", false]], "tri (class in histopath_bim_des.distribution)": [[11, "histopath_bim_des.distribution.Tri", false]], "tri (histopath_bim_des.distribution.inttri attribute)": [[11, "histopath_bim_des.distribution.IntTri.tri", false]], "type (histopath_bim_des.config.distributions.distributioninfo attribute)": [[6, "histopath_bim_des.config.distributions.DistributionInfo.type", false]], "type (histopath_bim_des.config.distributions.intdistributioninfo attribute)": [[6, "histopath_bim_des.config.distributions.IntDistributionInfo.type", false]], "type (histopath_bim_des.config.resources.resourceinfo attribute)": [[8, "histopath_bim_des.config.resources.ResourceInfo.type", false]], "unload (histopath_bim_des.process.core.runnerdurations attribute)": [[15, "histopath_bim_des.process.core.RunnerDurations.unload", false]], "unload_bone_station (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.unload_bone_station", false]], "unload_bone_station (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.unload_bone_station", false]], "unload_coverslip_machine_regular (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.unload_coverslip_machine_regular", false]], "unload_coverslip_machine_regular (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.unload_coverslip_machine_regular", false]], "unload_from_decalc_oven (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.unload_from_decalc_oven", false]], "unload_from_decalc_oven (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.unload_from_decalc_oven", false]], "unload_processing_machine (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.unload_processing_machine", false]], "unload_processing_machine (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.unload_processing_machine", false]], "unload_scanning_machine_megas (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.unload_scanning_machine_megas", false]], "unload_scanning_machine_megas (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.unload_scanning_machine_megas", false]], "unload_scanning_machine_regular (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.unload_scanning_machine_regular", false]], "unload_scanning_machine_regular (histopath_bim_des.model.taskdurations attribute)": [[13, "histopath_bim_des.model.TaskDurations.unload_scanning_machine_regular", false]], "unload_staining_machine_megas (histopath_bim_des.config.tasks.taskdurationsinfo attribute)": [[10, "histopath_bim_des.config.tasks.TaskDurationsInfo.unload_staining_machine_megas", false]], 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"histopath_bim_des.bim module", "histopath_bim_des.config package", "histopath_bim_des.config.arrivals module", "histopath_bim_des.config.batching module", "histopath_bim_des.config.config module", "histopath_bim_des.config.distributions module", "histopath_bim_des.config.global_vars module", "histopath_bim_des.config.resources module", "histopath_bim_des.config.runners module", "histopath_bim_des.config.tasks module", "histopath_bim_des.distribution module", "histopath_bim_des.excel module", "histopath_bim_des.model module", "histopath_bim_des.process package", "histopath_bim_des.process.core module", "histopath_bim_des.process.p10_reception module", "histopath_bim_des.process.p20_cutup module", "histopath_bim_des.process.p30_processing module", "histopath_bim_des.process.p40_microtomy module", "histopath_bim_des.process.p50_staining module", "histopath_bim_des.process.p60_labelling module", "histopath_bim_des.process.p70_scanning module", "histopath_bim_des.process.p80_qc module", "histopath_bim_des.process.p90_reporting module", "histopath_bim_des.specimens module", "histopath_bim_des.util module", "histopath_bim_des", "Model Configuration", "BIM-DES integration demo", "Histopathology processes", "Simulation and KPI extraction"], "titleterms": {"api": 29, "arriv": 3, "batch": 4, "bim": [1, 29], "config": [2, 3, 4, 5, 6, 7, 8, 9, 10], "configur": 28, "content": [0, 2, 14, 29], "core": 15, "de": 29, "demo": 29, "distribut": [6, 11], "excel": 12, "extract": 31, "gener": 28, "global_var": 7, "histopath_bim_d": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27], "histopathologi": 30, "indic": 29, "integr": 29, "kpi": 31, "model": [13, 28], "modul": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26], "p10_recept": 16, "p20_cutup": 17, "p30_process": 18, "p40_microtomi": 19, "p50_stain": 20, "p60_label": 21, "p70_scan": 22, "p80_qc": 23, "p90_report": 24, "packag": [0, 2, 14], "process": [14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 30], "refer": 29, "resourc": 8, "runner": [9, 28], "simul": 31, "specimen": 25, "submodul": [0, 2, 14], "subpackag": 0, "tabl": 29, "task": 10, "time": 28, "util": 26}})
\ No newline at end of file
diff --git a/docs/html/simulation.html b/docs/html/simulation.html
index 8dceb71..c6ed4aa 100644
--- a/docs/html/simulation.html
+++ b/docs/html/simulation.html
@@ -49,7 +49,7 @@
- Model Configuration
- Simulation and KPI extraction
- Histopathology processes
-- `Jupyter notebooks <https://github.com/yinchi/histopath-bim-des/tree/main/notebooks>`_
+- Jupyter notebooks
API reference: