ChangeLog

2025-02-12 Yukiteru Ono  <yono@k.u-tokyo.ac.jp>

    Release Version 3.0.5.

        The output file format is changed: FASTQ files and MAF files are
	compressed with gzip, SAM files are changed to BAM files.


2024-03-03 Yukiteru Ono  <yono@k.u-tokyo.ac.jp>

    Release Version 3.0.4.

        QSHMM-ONT-HQ.model (corrected) and ERRHMM-ONT-HQ.model (unchanged) are
	back.


2024-02-26 Yukiteru Ono  <yono@k.u-tokyo.ac.jp>

    Release Version 3.0.3.

        Temporarily removed QSHMM-ONT-HQ.model and ERRHMM-ONT-HQ.model.


2024-02-16 Yukiteru Ono  <yono@k.u-tokyo.ac.jp>

    Release Version 3.0.2.

        Malloc error fixed.


2023-11-22 Yukiteru Ono  <yono@k.u-tokyo.ac.jp>

    Release Version 3.0.1.

        --length-sd enabled for multi-pass sequencing in WGS simulation.

        Newly added QSHMM-ONT-HQ.model and ERRHMM-ONT-HQ.model.
	OSHMM-ONT-HQ.model and ERRHMM-ONT-HQ.model are recommended when
	simulating a read set with an average accuracy of 90% or higher.