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methylpy 1.4.7 #90

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liyangyang12 opened this issue May 9, 2024 · 3 comments
Open

methylpy 1.4.7 #90

liyangyang12 opened this issue May 9, 2024 · 3 comments

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@liyangyang12
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Dear yupenghe,
Is there any change in methylpy 1.4.7 compared to 1.4.6? 1.4.7 generates a lot of files such as dmr_filtered_allc_*-DNA.tsv_5_36.tsv in the folder when I run DMRfind, and dmr_rms_results_collapsed.tsv and dmr_rms_results.tsv.gz only have headers, not DMR regions. This problem was not encountered with 1.4.6, but it seems that conda can't install 1.4.6 at the moment!
Thanks.

@yupenghe
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Weird. Would

conda install -y -c bioconda -c conda-forge methylpy=1.4.6 

work?

@yupenghe
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If not, try

pip install --upgrade methylpy=1.4.6

@liyangyang12
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Thank you very much! 1.4.6 was not applied by conda. Methylpy 1.4.3 works.

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