Skip to content

Latest commit

 

History

History
11 lines (11 loc) · 669 Bytes

README.md

File metadata and controls

11 lines (11 loc) · 669 Bytes
Raw

This script could be used for conversion of a .tiff file to .zarr format with OME-NGFF multiscales metadata structure.

How to run

  1. open command line terminal
  2. install tif_to_zarr pip install tif_to_zarr
  3. run script using cli: tif_to_zarr --src=PATH_TO_SOURCE_DIRECTORY/input_file.tif --dest=PATH_TO_DEST_DIRECTORY/output_file.zarr
  4. to convert a tiff file to zarr with custom metadata values, you can run smthg similar to this: tif_to_zarr --src=path_to_source_tif --dest=path_to_output_zarr -a x z y -t 1.0 2.0 3.0 -s 4.0 5.0 6.0 -u nanometer nanometer nanometer
  5. To get the list of options, you may run this: tif_to_zarr --help