feat: addition of snakemake compatible format and linting

[mkatsanto]

Description

For the workflow to be compatible with snakemake workflows catalogue, there are specific guidelines for formating (using snakefmt) and linting (snakemake --lint)

Fixes #12

Type of change

Please delete options that are not relevant.

• New feature (non-breaking change which adds functionality)

Checklist:

• My code changes follow the style of this project
• I have performed a self-review of my own code
• My changes generate no new warnings
• I have added tests that prove my fix is effective or that my feature works
• New and existing tests pass locally with my changes

[dominikburri]

Hi @mkatsanto,
Thanks for the updates!
I installed snakefmt (thanks for the addition in the dev environment) and ran the new tests in tests/test_format. Both, snakefmt and linting exited with code 0.

LGTM :)

[noepozzan]

Hi @mkatsanto, Thanks for the updates! I installed snakefmt (thanks for the addition in the dev environment) and ran the new tests in tests/test_format. Both, snakefmt and linting exited with code 0.

LGTM :)

worked for me, too!

[mkatsanto]

add a configfile specification because linting in snakemake workflows catalogue does not take config as an input.