object 2-Macrophage.rds

[acebollada80]

Hi @zhangzlab,
I am reaching out to request your assistance in obtaining the "2-Macrophage.rds" file from your repository. I am currently running the macrophage_integration.R code, but unfortunately, I am unable to identify any Group 1 Macrophages in COVID patients in my dataset. This is quite puzzling, as the scientific article's graphs clearly indicate their presence.

I believe that by analyzing my results with the original "2-Macrophage.rds" file, I may be able to obtain the correct results. Therefore, I kindly request that you share this file with me. Any assistance you can provide would be greatly appreciated.

Thank you in advance for your help.

Best

Alberto Cebollada

[zhangzlab]

This file is a bit too large, is the barcode-celltype correspondence file enough for you?

[acebollada80]

Thank you for letting me know. Yes, the barcode-celltype correspondence file is enough for me. Regarding the object ncov, I understand that I need to select it based on the barcode-celltype. Thank you for your help.

[zhangzlab]

Got it, then myeloid.cell.annotation.meta.txt should be what you want.